From Wikipedia, the free encyclopedia
Anders Krogh is a
bioinformatician at the
University of Copenhagen ,
[1] where he leads the university's
bioinformatics center . He is known for his pioneering work on the use of
hidden Markov models in bioinformatics (together with
David Haussler ),
[2]
[3]
[4] and is co-author of a widely used textbook in bioinformatics.
[5] In addition, he also co-authored one of the early textbooks on
neural networks .
[6] His current research interests include
promoter analysis ,
[7]
[8]
[9]
non-coding RNA ,
[10]
[11]
[12]
gene prediction
[13]
[14]
[15] and
protein structure prediction .
[16]
[17]
[18]
[19]
[20]
In 2017, Krogh was elected a Fellow of the
International Society for Computational Biology (ISCB).
[21]
^
"User:Krogh - BINF - Bioinformatics Centre" . Archived from
the original on 2011-09-02. Retrieved 2011-04-14 . Professor Anders Krogh, The Bioinformatics Centre, Department of Molecuar Biology, University of Copenhagen
^ Krogh A, Brown M, Mian IS, Sjölander K, Haussler D (1994). "Hidden Markov models in computational biology. Applications to protein modeling". J. Mol. Biol . 235 (5): 1501–31.
doi :
10.1006/jmbi.1994.1104 .
PMID
8107089 .
^ Krogh A, Mian IS, Haussler D (1994).
"A hidden Markov model that finds genes in E. coli DNA" . Nucleic Acids Res . 22 (22): 4768–78.
doi :
10.1093/nar/22.22.4768 .
PMC
308529 .
PMID
7984429 .
^ Sjölander K, Karplus K, Brown M, et al. (1996).
"Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology" . Comput. Appl. Biosci . 12 (4): 327–45.
doi :
10.1093/bioinformatics/12.4.327 .
PMID
8902360 .
^
Durbin, Richard M. ;
Eddy, Sean R. ;
Krogh, Anders ; Mitchison, Graeme (1998),
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids (1st ed.), Cambridge, New York:
Cambridge University Press ,
ISBN
0-521-62971-3 ,
OCLC
593254083
^ Introduction to the Theory of Neural Computation (Santa Fe Institute Studies in the Sciences of Complexity). (1991) John A. Hertz, Richard G. Palmer, Anders Krogh, Westview Press
^ Marstrand TT, Frellsen J, Moltke I, et al. (2008). Copley R (ed.).
"Asap: A Framework for Over-Representation Statistics for Transcription Factor Binding Sites" . PLOS ONE . 3 (2): e1623.
Bibcode :
2008PLoSO...3.1623M .
doi :
10.1371/journal.pone.0001623 .
PMC
2229843 .
PMID
18286180 .
^ Frith MC, Valen E, Krogh A, Hayashizaki Y, Carninci P, Sandelin A (2008).
"A code for transcription initiation in mammalian genomes" . Genome Res . 18 (1): 1–12.
doi :
10.1101/gr.6831208 .
PMC
2134772 .
PMID
18032727 .
^ Bryne JC, Valen E, Tang MH, et al. (2008).
"JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update" . Nucleic Acids Res . 36 (Database issue): D102–6.
doi :
10.1093/nar/gkm955 .
PMC
2238834 .
PMID
18006571 .
^ Lindow M, Jacobsen A, Nygaard S, Mang Y, Krogh A (2007).
"Intragenomic Matching Reveals a Huge Potential for miRNA-Mediated Regulation in Plants" . PLOS Comput. Biol . 3 (11): e238.
Bibcode :
2007PLSCB...3..238L .
doi :
10.1371/journal.pcbi.0030238 .
PMC
2098865 .
PMID
18052543 .
^ Lindgreen S, Gardner PP, Krogh A (2007). "MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing". Bioinformatics . 23 (24): 3304–11.
CiteSeerX
10.1.1.563.7072 .
doi :
10.1093/bioinformatics/btm525 .
PMID
18006551 .
^ Lindgreen S, Gardner PP, Krogh A (2006). "Measuring covariation in RNA alignments: physical realism improves information measures". Bioinformatics . 22 (24): 2988–95.
doi :
10.1093/bioinformatics/btl514 .
PMID
17038338 .
^ Munch K, Krogh A (2006).
"Automatic generation of gene finders for eukaryotic species" . BMC Bioinformatics . 7 : 263.
doi :
10.1186/1471-2105-7-263 .
PMC
1522026 .
PMID
16712739 .
^ Munch K, Gardner PP, Arctander P, Krogh A (2006).
"A hidden Markov model approach for determining expression from genomic tiling micro arrays" . BMC Bioinformatics . 7 : 239.
doi :
10.1186/1471-2105-7-239 .
PMC
1481622 .
PMID
16672042 .
^ Nielsen P, Krogh A (2005).
"Large-scale prokaryotic gene prediction and comparison to genome annotation" . Bioinformatics . 21 (24): 4322–9.
doi :
10.1093/bioinformatics/bti701 .
PMID
16249266 .
^
^ Winther O, Krogh A (2004). "Teaching computers to fold proteins". Phys. Rev. E . 70 (3): 030903.
arXiv :
cond-mat/0309497 .
Bibcode :
2004PhRvE..70c0903W .
doi :
10.1103/PhysRevE.70.030903 .
PMID
15524499 .
S2CID
103560 .
^ Won KJ, Hamelryck T, Prügel-Bennett A, Krogh A (2007).
"An evolutionary method for learning HMM structure: prediction of protein secondary structure" . BMC Bioinformatics . 8 : 357.
doi :
10.1186/1471-2105-8-357 .
PMC
2072961 .
PMID
17888163 .
^ Hamelryck T, Kent JT, Krogh A (2006).
"Sampling Realistic Protein Conformations Using Local Structural Bias" . PLOS Comput. Biol . 2 (9): e131.
Bibcode :
2006PLSCB...2..131H .
doi :
10.1371/journal.pcbi.0020131 .
PMC
1570370 .
PMID
17002495 .
^ Boomsma W, Mardia KV, Taylor CC, Ferkinghoff-Borg J, Krogh A, Hamelryck T (2008).
"A generative, probabilistic model of local protein structure" . PNAS . 105 (26): 8932–8937.
Bibcode :
2008PNAS..105.8932B .
doi :
10.1073/pnas.0801715105 .
PMC
2440424 .
PMID
18579771 .
^
"February 13, 2017: The International Society for Computational Biology Names Seven Members as the ISCB Fellows Class of 2017" . www.iscb.org . Retrieved 13 February 2017 .
International National Academics Other
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