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From Wikipedia, the free encyclopedia
Joshua William Shaevitz
Joshua William Shaevitz at Princeton in 2019.
Born (1977-11-06) November 6, 1977 (age 46)
Los Angeles, CA
NationalityAmerican
Alma mater Columbia University
Stanford University
Scientific career
Institutions University of California, Berkeley
Princeton University
Doctoral advisor Steven Block
Website shaevitzlab.princeton.edu

Joshua Shaevitz (born 1977) is an American biophysicist and Professor of Physics at the Lewis-Sigler Institute at Princeton University in Princeton, NJ. [1] He is known for his work in single-molecule biophysics, bacterial growth and motility, and animal behavior. [2]

Education and early career

Shaevitz completed his Bachelor's degree in Physics at Columbia University in New York in 1999 where he was an I. I. Rabi Scholar. He received his PhD in 2004 from Stanford University where he studied the molecular motors kinesin [3] and RNA polymerase [4] [5] using optical tweezers in the group of Steven Block. Shaevitz then moved to the University of California, Berkeley as a Miller Fellow. There, he focused on the motility of bacteria, including the actin-propelled Rickettsia rickettsii, [6] Myxococcus xanthus, [7] and the wall-less Spiroplasma. [8] Since 2007, Shaevitz has been on the faculty of Princeton University with appointments in the Department of Physics and the Lewis-Sigler Institute for Integrative Genomics where he holds the rank of Professor.

Research

Shaevitz's work focuses on precision measurements in a variety of biological systems, focusing on topics related to cell shape in bacteria, active matter and pattern formation in groups of moving cells, and the quantification of animal behavior.

His group pioneered the use of 3D live-cell imaging to study the shape of bacteria during growth. In a series of papers, Shaevitz and colleagues unraveled how a cell-wall insertion mechanism with helical coordination can produce cells with the correct shape in both rod and helical cells. [9] [10] [11] [12] His group also studies bacterial cell mechanics, including bending rigidity, [13] turgor pressure and cell wall stiffness, [14] and pressure regulation. [15] [16]

Shaevitz also has worked on the mechanisms of gliding motility and collective behavior in the social bacterium Myxococcus xanthus. This work includes measurement of the mechanochemistry of individual gliding motors inside live bacteria [17] [18] and the connection between active matter phase transitions and evolutionarily advantageous fruiting body formation. [19] [20]

A third thread to Shaevitz's research involves the quantification of animal behavior using supervised and unsupervised machine learning algorithms. Shaevitz and Princeton Neuroscience professor Mala Murthy published an automated system (LEAP) for measuring animal pose from large movie data sets. [21] This has recently been extended to multi-animal data in a package called SLEAP. [22] His work has extended to understanding the dynamics of animal behavior through unsupervised clustering methods in collaboration with Princeton Physics colleague William Bialek and others. [23] [24] [25] [26]

Scientific activities

Awards and honors

References

  1. ^ "Joshua Shaevitz | Department of Physics". phy.princeton.edu. Retrieved 2020-10-15.
  2. ^ "Shaevitz Lab @ Princeton | Experimental Biophysics from Molecules to Cells to Animals". shaevitzlab.princeton.edu. Retrieved 2020-10-15.
  3. ^ Block, Steven M.; Asbury, Charles L.; Shaevitz, Joshua W.; Lang, Matthew J. (2003-03-04). "Probing the kinesin reaction cycle with a 2D optical force clamp". Proceedings of the National Academy of Sciences of the United States of America. 100 (5): 2351–2356. Bibcode: 2003PNAS..100.2351B. doi: 10.1073/pnas.0436709100. ISSN  0027-8424. PMC  151344. PMID  12591957.
  4. ^ Shaevitz, Joshua W.; Abbondanzieri, Elio A.; Landick, Robert; Block, Steven M. (2003-12-11). "Backtracking by single RNA polymerase molecules observed at near-base-pair resolution". Nature. 426 (6967): 684–687. Bibcode: 2003Natur.426..684S. doi: 10.1038/nature02191. ISSN  1476-4687. PMC  1483218. PMID  14634670.
  5. ^ Abbondanzieri, Elio A.; Greenleaf, William J.; Shaevitz, Joshua W.; Landick, Robert; Block, Steven M. (2005-11-24). "Direct observation of base-pair stepping by RNA polymerase". Nature. 438 (7067): 460–465. Bibcode: 2005Natur.438..460A. doi: 10.1038/nature04268. ISSN  1476-4687. PMC  1356566. PMID  16284617.
  6. ^ Shaevitz, Joshua W.; Fletcher, Daniel A. (2007-10-02). "Load fluctuations drive actin network growth". Proceedings of the National Academy of Sciences of the United States of America. 104 (40): 15688–15692. arXiv: 0708.1791. Bibcode: 2007PNAS..10415688S. doi: 10.1073/pnas.0702601104. ISSN  0027-8424. PMC  2000411. PMID  17895390.
  7. ^ Mignot, Tâm; Shaevitz, Joshua W.; Hartzell, Patricia L.; Zusman, David R. (2007-02-09). "Evidence that focal adhesion complexes power bacterial gliding motility". Science. 315 (5813): 853–856. Bibcode: 2007Sci...315..853M. doi: 10.1126/science.1137223. ISSN  1095-9203. PMC  4095873. PMID  17289998.
  8. ^ Shaevitz, Joshua W.; Lee, Joanna Y.; Fletcher, Daniel A. (2005-09-23). "Spiroplasma swim by a processive change in body helicity". Cell. 122 (6): 941–945. doi: 10.1016/j.cell.2005.07.004. ISSN  0092-8674. PMID  16179261. S2CID  5070808.
  9. ^ van Teeffelen, Sven; Wang, Siyuan; Furchtgott, Leon; Huang, Kerwyn Casey; Wingreen, Ned S.; Shaevitz, Joshua W.; Gitai, Zemer (2011-09-20). "The bacterial actin MreB rotates, and rotation depends on cell-wall assembly". Proceedings of the National Academy of Sciences of the United States of America. 108 (38): 15822–15827. Bibcode: 2011PNAS..10815822V. doi: 10.1073/pnas.1108999108. ISSN  1091-6490. PMC  3179079. PMID  21903929.
  10. ^ Wang, Siyuan; Furchtgott, Leon; Huang, Kerwyn Casey; Shaevitz, Joshua W. (2012-03-06). "Helical insertion of peptidoglycan produces chiral ordering of the bacterial cell wall". Proceedings of the National Academy of Sciences of the United States of America. 109 (10): E595–604. doi: 10.1073/pnas.1117132109. ISSN  1091-6490. PMC  3309786. PMID  22343529.
  11. ^ Bartlett, Thomas M.; Bratton, Benjamin P.; Duvshani, Amit; Miguel, Amanda; Sheng, Ying; Martin, Nicholas R.; Nguyen, Jeffrey P.; Persat, Alexandre; Desmarais, Samantha M.; VanNieuwenhze, Michael S.; Huang, Kerwyn Casey (2017-01-12). "A Periplasmic Polymer Curves Vibrio cholerae and Promotes Pathogenesis". Cell. 168 (1–2): 172–185.e15. doi: 10.1016/j.cell.2016.12.019. ISSN  1097-4172. PMC  5287421. PMID  28086090.
  12. ^ Taylor, Jennifer A.; Bratton, Benjamin P.; Sichel, Sophie R.; Blair, Kris M.; Jacobs, Holly M.; DeMeester, Kristen E.; Kuru, Erkin; Gray, Joe; Biboy, Jacob; VanNieuwenhze, Michael S.; Vollmer, Waldemar (2020-01-09). "Distinct cytoskeletal proteins define zones of enhanced cell wall synthesis in Helicobacter pylori". eLife. 9. doi: 10.7554/eLife.52482. ISSN  2050-084X. PMC  7012605. PMID  31916938.
  13. ^ Wang, Siyuan; Arellano-Santoyo, Hugo; Combs, Peter A.; Shaevitz, Joshua W. (2010-05-18). "Actin-like cytoskeleton filaments contribute to cell mechanics in bacteria". Proceedings of the National Academy of Sciences of the United States of America. 107 (20): 9182–9185. Bibcode: 2010PNAS..107.9182W. doi: 10.1073/pnas.0911517107. ISSN  1091-6490. PMC  2889055. PMID  20439764.
  14. ^ Deng, Yi; Sun, Mingzhai; Shaevitz, Joshua W. (2011-10-07). "Direct measurement of cell wall stress stiffening and turgor pressure in live bacterial cells". Physical Review Letters. 107 (15): 158101. arXiv: 1104.1421. Bibcode: 2011PhRvL.107o8101D. doi: 10.1103/PhysRevLett.107.158101. ISSN  1079-7114. PMID  22107320. S2CID  15880029.
  15. ^ Pilizota, Teuta; Shaevitz, Joshua W. (2013-06-18). "Plasmolysis and cell shape depend on solute outer-membrane permeability during hyperosmotic shock in E. coli". Biophysical Journal. 104 (12): 2733–2742. Bibcode: 2013BpJ...104.2733P. doi: 10.1016/j.bpj.2013.05.011. ISSN  1542-0086. PMC  3686340. PMID  23790382.
  16. ^ Pilizota, Teuta; Shaevitz, Joshua W. (2014-10-21). "Origins of Escherichia coli growth rate and cell shape changes at high external osmolality". Biophysical Journal. 107 (8): 1962–1969. Bibcode: 2014BpJ...107.1962P. doi: 10.1016/j.bpj.2014.08.025. ISSN  1542-0086. PMC  4213672. PMID  25418177.
  17. ^ Sun, Mingzhai; Wartel, Morgane; Cascales, Eric; Shaevitz, Joshua W.; Mignot, Tâm (2011-05-03). "Motor-driven intracellular transport powers bacterial gliding motility". Proceedings of the National Academy of Sciences of the United States of America. 108 (18): 7559–7564. doi: 10.1073/pnas.1101101108. ISSN  1091-6490. PMC  3088616. PMID  21482768.
  18. ^ Balagam, Rajesh; Litwin, Douglas B.; Czerwinski, Fabian; Sun, Mingzhai; Kaplan, Heidi B.; Shaevitz, Joshua W.; Igoshin, Oleg A. (May 2014). "Myxococcus xanthus gliding motors are elastically coupled to the substrate as predicted by the focal adhesion model of gliding motility". PLOS Computational Biology. 10 (5): e1003619. arXiv: 1401.3220. Bibcode: 2014PLSCB..10E3619B. doi: 10.1371/journal.pcbi.1003619. ISSN  1553-7358. PMC  4014417. PMID  24810164.
  19. ^ Thutupalli, Shashi; Sun, Mingzhai; Bunyak, Filiz; Palaniappan, Kannappan; Shaevitz, Joshua W. (2015-08-06). "Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation". Journal of the Royal Society, Interface. 12 (109): 20150049. doi: 10.1098/rsif.2015.0049. ISSN  1742-5662. PMC  4535398. PMID  26246416.
  20. ^ Liu, Guannan; Patch, Adam; Bahar, Fatmagül; Yllanes, David; Welch, Roy D.; Marchetti, M. Cristina; Thutupalli, Shashi; Shaevitz, Joshua W. (2019-06-21). "Self-Driven Phase Transitions Drive Myxococcus xanthus Fruiting Body Formation". Physical Review Letters. 122 (24): 248102. arXiv: 1709.06012. Bibcode: 2019PhRvL.122x8102L. doi: 10.1103/PhysRevLett.122.248102. ISSN  1079-7114. PMID  31322369. S2CID  38823898.
  21. ^ Pereira, Talmo D.; Aldarondo, Diego E.; Willmore, Lindsay; Kislin, Mikhail; Wang, Samuel S.-H.; Murthy, Mala; Shaevitz, Joshua W. (January 2019). "Fast animal pose estimation using deep neural networks". Nature Methods. 16 (1): 117–125. doi: 10.1038/s41592-018-0234-5. ISSN  1548-7105. PMC  6899221. PMID  30573820.
  22. ^ Pereira, Talmo D.; Tabris, Nathaniel; Li, Junyu; Ravindranath, Shruthi; Papadoyannis, Eleni S.; Wang, Z. Yan; Turner, David M.; McKenzie-Smith, Grace; Kocher, Sarah D.; Falkner, Annegret L.; Shaevitz, Joshua W. (2020-09-02). "SLEAP: Multi-animal pose tracking". bioRxiv: 2020.08.31.276246. doi: 10.1101/2020.08.31.276246. S2CID  221510569.
  23. ^ Berman, Gordon J.; Choi, Daniel M.; Bialek, William; Shaevitz, Joshua W. (2014-10-06). "Mapping the stereotyped behaviour of freely moving fruit flies". Journal of the Royal Society, Interface. 11 (99). doi: 10.1098/rsif.2014.0672. ISSN  1742-5662. PMC  4233753. PMID  25142523.
  24. ^ Berman, Gordon J.; Bialek, William; Shaevitz, Joshua W. (18 October 2016). "Predictability and hierarchy in Drosophila behavior". Proceedings of the National Academy of Sciences of the United States of America. 113 (42): 11943–11948. arXiv: 1605.03626. Bibcode: 2016PNAS..11311943B. doi: 10.1073/pnas.1607601113. ISSN  1091-6490. PMC  5081631. PMID  27702892.
  25. ^ Klibaite, Ugne; Berman, Gordon J.; Cande, Jessica; Stern, David L.; Shaevitz, Joshua W. (16 February 2017). "An unsupervised method for quantifying the behavior of paired animals". Physical Biology. 14 (1): 015006. arXiv: 1609.09345. Bibcode: 2017PhBio..14a5006K. doi: 10.1088/1478-3975/aa5c50. ISSN  1478-3975. PMC  5414632. PMID  28140374.
  26. ^ Cande, Jessica; Namiki, Shigehiro; Qiu, Jirui; Korff, Wyatt; Card, Gwyneth M.; Shaevitz, Joshua W.; Stern, David L.; Berman, Gordon J. (26 June 2018). "Optogenetic dissection of descending behavioral control in Drosophila". eLife. 7. doi: 10.7554/eLife.34275. ISSN  2050-084X. PMC  6031430. PMID  29943729.
  27. ^ "Governance - Unit - DBIO". engage.aps.org. Retrieved 2024-03-21.
  28. ^ "Executive Committee - Unit - DBIO". engage.aps.org. Retrieved 2024-03-21.
  29. ^ "APS Fellow Archive". www.aps.org. Retrieved 2020-10-15.
  30. ^ "The Presidential Early Career Award for Scientists and Engineers: Recipient Details | NSF - National Science Foundation". www.nsf.gov. Retrieved 2020-10-15.
  31. ^ "Pew Biomedical Scholars: Joshua W. Shaevitz, Ph.D." Retrieved 2020-10-15.
  32. ^ "Five awarded Sloan Research Fellowships". Princeton University. Retrieved 2020-10-15.

External links

From Wikipedia, the free encyclopedia
Joshua William Shaevitz
Joshua William Shaevitz at Princeton in 2019.
Born (1977-11-06) November 6, 1977 (age 46)
Los Angeles, CA
NationalityAmerican
Alma mater Columbia University
Stanford University
Scientific career
Institutions University of California, Berkeley
Princeton University
Doctoral advisor Steven Block
Website shaevitzlab.princeton.edu

Joshua Shaevitz (born 1977) is an American biophysicist and Professor of Physics at the Lewis-Sigler Institute at Princeton University in Princeton, NJ. [1] He is known for his work in single-molecule biophysics, bacterial growth and motility, and animal behavior. [2]

Education and early career

Shaevitz completed his Bachelor's degree in Physics at Columbia University in New York in 1999 where he was an I. I. Rabi Scholar. He received his PhD in 2004 from Stanford University where he studied the molecular motors kinesin [3] and RNA polymerase [4] [5] using optical tweezers in the group of Steven Block. Shaevitz then moved to the University of California, Berkeley as a Miller Fellow. There, he focused on the motility of bacteria, including the actin-propelled Rickettsia rickettsii, [6] Myxococcus xanthus, [7] and the wall-less Spiroplasma. [8] Since 2007, Shaevitz has been on the faculty of Princeton University with appointments in the Department of Physics and the Lewis-Sigler Institute for Integrative Genomics where he holds the rank of Professor.

Research

Shaevitz's work focuses on precision measurements in a variety of biological systems, focusing on topics related to cell shape in bacteria, active matter and pattern formation in groups of moving cells, and the quantification of animal behavior.

His group pioneered the use of 3D live-cell imaging to study the shape of bacteria during growth. In a series of papers, Shaevitz and colleagues unraveled how a cell-wall insertion mechanism with helical coordination can produce cells with the correct shape in both rod and helical cells. [9] [10] [11] [12] His group also studies bacterial cell mechanics, including bending rigidity, [13] turgor pressure and cell wall stiffness, [14] and pressure regulation. [15] [16]

Shaevitz also has worked on the mechanisms of gliding motility and collective behavior in the social bacterium Myxococcus xanthus. This work includes measurement of the mechanochemistry of individual gliding motors inside live bacteria [17] [18] and the connection between active matter phase transitions and evolutionarily advantageous fruiting body formation. [19] [20]

A third thread to Shaevitz's research involves the quantification of animal behavior using supervised and unsupervised machine learning algorithms. Shaevitz and Princeton Neuroscience professor Mala Murthy published an automated system (LEAP) for measuring animal pose from large movie data sets. [21] This has recently been extended to multi-animal data in a package called SLEAP. [22] His work has extended to understanding the dynamics of animal behavior through unsupervised clustering methods in collaboration with Princeton Physics colleague William Bialek and others. [23] [24] [25] [26]

Scientific activities

Awards and honors

References

  1. ^ "Joshua Shaevitz | Department of Physics". phy.princeton.edu. Retrieved 2020-10-15.
  2. ^ "Shaevitz Lab @ Princeton | Experimental Biophysics from Molecules to Cells to Animals". shaevitzlab.princeton.edu. Retrieved 2020-10-15.
  3. ^ Block, Steven M.; Asbury, Charles L.; Shaevitz, Joshua W.; Lang, Matthew J. (2003-03-04). "Probing the kinesin reaction cycle with a 2D optical force clamp". Proceedings of the National Academy of Sciences of the United States of America. 100 (5): 2351–2356. Bibcode: 2003PNAS..100.2351B. doi: 10.1073/pnas.0436709100. ISSN  0027-8424. PMC  151344. PMID  12591957.
  4. ^ Shaevitz, Joshua W.; Abbondanzieri, Elio A.; Landick, Robert; Block, Steven M. (2003-12-11). "Backtracking by single RNA polymerase molecules observed at near-base-pair resolution". Nature. 426 (6967): 684–687. Bibcode: 2003Natur.426..684S. doi: 10.1038/nature02191. ISSN  1476-4687. PMC  1483218. PMID  14634670.
  5. ^ Abbondanzieri, Elio A.; Greenleaf, William J.; Shaevitz, Joshua W.; Landick, Robert; Block, Steven M. (2005-11-24). "Direct observation of base-pair stepping by RNA polymerase". Nature. 438 (7067): 460–465. Bibcode: 2005Natur.438..460A. doi: 10.1038/nature04268. ISSN  1476-4687. PMC  1356566. PMID  16284617.
  6. ^ Shaevitz, Joshua W.; Fletcher, Daniel A. (2007-10-02). "Load fluctuations drive actin network growth". Proceedings of the National Academy of Sciences of the United States of America. 104 (40): 15688–15692. arXiv: 0708.1791. Bibcode: 2007PNAS..10415688S. doi: 10.1073/pnas.0702601104. ISSN  0027-8424. PMC  2000411. PMID  17895390.
  7. ^ Mignot, Tâm; Shaevitz, Joshua W.; Hartzell, Patricia L.; Zusman, David R. (2007-02-09). "Evidence that focal adhesion complexes power bacterial gliding motility". Science. 315 (5813): 853–856. Bibcode: 2007Sci...315..853M. doi: 10.1126/science.1137223. ISSN  1095-9203. PMC  4095873. PMID  17289998.
  8. ^ Shaevitz, Joshua W.; Lee, Joanna Y.; Fletcher, Daniel A. (2005-09-23). "Spiroplasma swim by a processive change in body helicity". Cell. 122 (6): 941–945. doi: 10.1016/j.cell.2005.07.004. ISSN  0092-8674. PMID  16179261. S2CID  5070808.
  9. ^ van Teeffelen, Sven; Wang, Siyuan; Furchtgott, Leon; Huang, Kerwyn Casey; Wingreen, Ned S.; Shaevitz, Joshua W.; Gitai, Zemer (2011-09-20). "The bacterial actin MreB rotates, and rotation depends on cell-wall assembly". Proceedings of the National Academy of Sciences of the United States of America. 108 (38): 15822–15827. Bibcode: 2011PNAS..10815822V. doi: 10.1073/pnas.1108999108. ISSN  1091-6490. PMC  3179079. PMID  21903929.
  10. ^ Wang, Siyuan; Furchtgott, Leon; Huang, Kerwyn Casey; Shaevitz, Joshua W. (2012-03-06). "Helical insertion of peptidoglycan produces chiral ordering of the bacterial cell wall". Proceedings of the National Academy of Sciences of the United States of America. 109 (10): E595–604. doi: 10.1073/pnas.1117132109. ISSN  1091-6490. PMC  3309786. PMID  22343529.
  11. ^ Bartlett, Thomas M.; Bratton, Benjamin P.; Duvshani, Amit; Miguel, Amanda; Sheng, Ying; Martin, Nicholas R.; Nguyen, Jeffrey P.; Persat, Alexandre; Desmarais, Samantha M.; VanNieuwenhze, Michael S.; Huang, Kerwyn Casey (2017-01-12). "A Periplasmic Polymer Curves Vibrio cholerae and Promotes Pathogenesis". Cell. 168 (1–2): 172–185.e15. doi: 10.1016/j.cell.2016.12.019. ISSN  1097-4172. PMC  5287421. PMID  28086090.
  12. ^ Taylor, Jennifer A.; Bratton, Benjamin P.; Sichel, Sophie R.; Blair, Kris M.; Jacobs, Holly M.; DeMeester, Kristen E.; Kuru, Erkin; Gray, Joe; Biboy, Jacob; VanNieuwenhze, Michael S.; Vollmer, Waldemar (2020-01-09). "Distinct cytoskeletal proteins define zones of enhanced cell wall synthesis in Helicobacter pylori". eLife. 9. doi: 10.7554/eLife.52482. ISSN  2050-084X. PMC  7012605. PMID  31916938.
  13. ^ Wang, Siyuan; Arellano-Santoyo, Hugo; Combs, Peter A.; Shaevitz, Joshua W. (2010-05-18). "Actin-like cytoskeleton filaments contribute to cell mechanics in bacteria". Proceedings of the National Academy of Sciences of the United States of America. 107 (20): 9182–9185. Bibcode: 2010PNAS..107.9182W. doi: 10.1073/pnas.0911517107. ISSN  1091-6490. PMC  2889055. PMID  20439764.
  14. ^ Deng, Yi; Sun, Mingzhai; Shaevitz, Joshua W. (2011-10-07). "Direct measurement of cell wall stress stiffening and turgor pressure in live bacterial cells". Physical Review Letters. 107 (15): 158101. arXiv: 1104.1421. Bibcode: 2011PhRvL.107o8101D. doi: 10.1103/PhysRevLett.107.158101. ISSN  1079-7114. PMID  22107320. S2CID  15880029.
  15. ^ Pilizota, Teuta; Shaevitz, Joshua W. (2013-06-18). "Plasmolysis and cell shape depend on solute outer-membrane permeability during hyperosmotic shock in E. coli". Biophysical Journal. 104 (12): 2733–2742. Bibcode: 2013BpJ...104.2733P. doi: 10.1016/j.bpj.2013.05.011. ISSN  1542-0086. PMC  3686340. PMID  23790382.
  16. ^ Pilizota, Teuta; Shaevitz, Joshua W. (2014-10-21). "Origins of Escherichia coli growth rate and cell shape changes at high external osmolality". Biophysical Journal. 107 (8): 1962–1969. Bibcode: 2014BpJ...107.1962P. doi: 10.1016/j.bpj.2014.08.025. ISSN  1542-0086. PMC  4213672. PMID  25418177.
  17. ^ Sun, Mingzhai; Wartel, Morgane; Cascales, Eric; Shaevitz, Joshua W.; Mignot, Tâm (2011-05-03). "Motor-driven intracellular transport powers bacterial gliding motility". Proceedings of the National Academy of Sciences of the United States of America. 108 (18): 7559–7564. doi: 10.1073/pnas.1101101108. ISSN  1091-6490. PMC  3088616. PMID  21482768.
  18. ^ Balagam, Rajesh; Litwin, Douglas B.; Czerwinski, Fabian; Sun, Mingzhai; Kaplan, Heidi B.; Shaevitz, Joshua W.; Igoshin, Oleg A. (May 2014). "Myxococcus xanthus gliding motors are elastically coupled to the substrate as predicted by the focal adhesion model of gliding motility". PLOS Computational Biology. 10 (5): e1003619. arXiv: 1401.3220. Bibcode: 2014PLSCB..10E3619B. doi: 10.1371/journal.pcbi.1003619. ISSN  1553-7358. PMC  4014417. PMID  24810164.
  19. ^ Thutupalli, Shashi; Sun, Mingzhai; Bunyak, Filiz; Palaniappan, Kannappan; Shaevitz, Joshua W. (2015-08-06). "Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation". Journal of the Royal Society, Interface. 12 (109): 20150049. doi: 10.1098/rsif.2015.0049. ISSN  1742-5662. PMC  4535398. PMID  26246416.
  20. ^ Liu, Guannan; Patch, Adam; Bahar, Fatmagül; Yllanes, David; Welch, Roy D.; Marchetti, M. Cristina; Thutupalli, Shashi; Shaevitz, Joshua W. (2019-06-21). "Self-Driven Phase Transitions Drive Myxococcus xanthus Fruiting Body Formation". Physical Review Letters. 122 (24): 248102. arXiv: 1709.06012. Bibcode: 2019PhRvL.122x8102L. doi: 10.1103/PhysRevLett.122.248102. ISSN  1079-7114. PMID  31322369. S2CID  38823898.
  21. ^ Pereira, Talmo D.; Aldarondo, Diego E.; Willmore, Lindsay; Kislin, Mikhail; Wang, Samuel S.-H.; Murthy, Mala; Shaevitz, Joshua W. (January 2019). "Fast animal pose estimation using deep neural networks". Nature Methods. 16 (1): 117–125. doi: 10.1038/s41592-018-0234-5. ISSN  1548-7105. PMC  6899221. PMID  30573820.
  22. ^ Pereira, Talmo D.; Tabris, Nathaniel; Li, Junyu; Ravindranath, Shruthi; Papadoyannis, Eleni S.; Wang, Z. Yan; Turner, David M.; McKenzie-Smith, Grace; Kocher, Sarah D.; Falkner, Annegret L.; Shaevitz, Joshua W. (2020-09-02). "SLEAP: Multi-animal pose tracking". bioRxiv: 2020.08.31.276246. doi: 10.1101/2020.08.31.276246. S2CID  221510569.
  23. ^ Berman, Gordon J.; Choi, Daniel M.; Bialek, William; Shaevitz, Joshua W. (2014-10-06). "Mapping the stereotyped behaviour of freely moving fruit flies". Journal of the Royal Society, Interface. 11 (99). doi: 10.1098/rsif.2014.0672. ISSN  1742-5662. PMC  4233753. PMID  25142523.
  24. ^ Berman, Gordon J.; Bialek, William; Shaevitz, Joshua W. (18 October 2016). "Predictability and hierarchy in Drosophila behavior". Proceedings of the National Academy of Sciences of the United States of America. 113 (42): 11943–11948. arXiv: 1605.03626. Bibcode: 2016PNAS..11311943B. doi: 10.1073/pnas.1607601113. ISSN  1091-6490. PMC  5081631. PMID  27702892.
  25. ^ Klibaite, Ugne; Berman, Gordon J.; Cande, Jessica; Stern, David L.; Shaevitz, Joshua W. (16 February 2017). "An unsupervised method for quantifying the behavior of paired animals". Physical Biology. 14 (1): 015006. arXiv: 1609.09345. Bibcode: 2017PhBio..14a5006K. doi: 10.1088/1478-3975/aa5c50. ISSN  1478-3975. PMC  5414632. PMID  28140374.
  26. ^ Cande, Jessica; Namiki, Shigehiro; Qiu, Jirui; Korff, Wyatt; Card, Gwyneth M.; Shaevitz, Joshua W.; Stern, David L.; Berman, Gordon J. (26 June 2018). "Optogenetic dissection of descending behavioral control in Drosophila". eLife. 7. doi: 10.7554/eLife.34275. ISSN  2050-084X. PMC  6031430. PMID  29943729.
  27. ^ "Governance - Unit - DBIO". engage.aps.org. Retrieved 2024-03-21.
  28. ^ "Executive Committee - Unit - DBIO". engage.aps.org. Retrieved 2024-03-21.
  29. ^ "APS Fellow Archive". www.aps.org. Retrieved 2020-10-15.
  30. ^ "The Presidential Early Career Award for Scientists and Engineers: Recipient Details | NSF - National Science Foundation". www.nsf.gov. Retrieved 2020-10-15.
  31. ^ "Pew Biomedical Scholars: Joshua W. Shaevitz, Ph.D." Retrieved 2020-10-15.
  32. ^ "Five awarded Sloan Research Fellowships". Princeton University. Retrieved 2020-10-15.

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