Yiliang Ding | |
|---|---|
 | |
| Born | September 8, 1982 |
| Nationality | Chinese |
| Education |
Shanghai Jiao Tong University University of East Anglia |
| Scientific career | |
| Fields |
RNA Biology Plant Biology |
| Institutions | John Innes Centre University of East Anglia |
| Doctoral advisor | Giles Oldroyd |
| Website |
www |
Yiliang Ding has been a group leader with tenure at the John Innes Centre since 2014, working on the functional roles of the RNA structure in living cells. [1] [2] She has also been an Honorary Group Leader at the Babraham Institute and an Honorary Professor at the University of East Anglia since 2024.
`
Yiliang spent two months in the lab of David Lilley at the University of Dundee between November and December 2009. [3] Prior to her move to the John Innes Centre as a group leader, Yiliang worked as a Postdoctoral Scholar at Penn State University, where she worked on the structural folding of RNA under the Human Frontier Science Program Grant from 2010 to 2013. Yiliang obtained the David Phillips Fellowship and started her own group at the John Innes Centre in 2014. She was granted tenure at the John Innes Centre in 2019. Yiliang's group researches RNA structure and post-transcriptional gene regulations. Her group’s research on nucleic acid chemistry and RNA biology focuses on understanding the dynamics of RNA structure in living cells. Yiliang develops new approaches for revealing in vivo RNA structurome. In particular her work on a high throughput method, Structure-seq, to analyse one of the first two genome-wide in vivo RNA structure maps, was published in Nature in 2013. [4] This paper "In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features" has been widely cited [5] [6] [7] as a method for in vivo RNA structural analysis. [8]
Since 2014, Yiliang's group has been studying the functional roles of RNA structure in diverse biological processes such as mRNA processing (splicing and polyadenylation), [9] phase separation, [10] translation, [11] and RNA degradation. [12] Yiliang's group has also developed new methods to reveal the existence of tertiary RNA G-quadruplex structures in eukaryotes [13] and uncovered that RNA G-quadruplex structure serves as a molecular marker to facilitate plant adaptation to the cold during evolution. [14] Recently, Yiliang's group has developed the single-molecule RNA structure profiling method that is capable of dissecting individual RNA structure conformation in living cells for the first time. The group revealed the functional importance of RNA structure in long noncoding RNAs. [15] She is a member of the editorial board of Nucleic Acids Research.
In January 2024 Yiliang Ding was one of the nine recipients of the 2024 Blavatnik Awards for Young Scientists in the UK [16] and is the first UK plant scientist to receive the award.
- ^ "Five new Project Leaders join the John Innes Centre". John Innes Centre. 14 November 2014. Retrieved 10 August 2023.
- ^ "Dr Yiliang Ding". John Innes Centre. 30 November 2018. Retrieved 10 August 2023.
- ^ "Professor David Lilley". University of Dundee. Retrieved 10 August 2023.
- ^ Assmann, Sarah M.; Bevilacqua, Philip C.; Yu Zhang; Kwok, Chun Kit; Tang, Yin; Ding, Yiliang (January 2014). "In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features". Nature. 505 (7485): 696–700. Bibcode: 2014Natur.505..696D. doi: 10.1038/nature12756. ISSN 1476-4687. PMID 24270811. S2CID 205236375.
- ^ Van Dijk, Erwin L.; Auger, Hélène; Jaszczyszyn, Yan; Thermes, Claude (September 2014). "Ten years of next-generation sequencing technology". Trends in Genetics. 30 (9): 418–426. doi: 10.1016/j.tig.2014.07.001. PMID 25108476.
- ^ Tuschl, Thomas; Hafner, Markus; Gerstberger, Stefanie (December 2014). "A census of human RNA-binding proteins". Nature Reviews Genetics. 15 (12): 829–845. doi: 10.1038/nrg3813. ISSN 1471-0064. PMC 11148870. PMID 25365966. S2CID 7882934.
- ^ Pan, Tao; Parisien, Marc; Chuan He; Zheng, Guanqun; Dai, Qing; Liu, Nian (February 2015). "N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions". Nature. 518 (7540): 560–564. Bibcode: 2015Natur.518..560L. doi: 10.1038/nature14234. ISSN 1476-4687. PMC 4355918. PMID 25719671.
- ^ "Google Scholar User Profile". Google Scholar. Retrieved 17 December 2019.
- ^ Liu, Zhenshan; Liu, Qi; Yang, Xiaofei; Zhang, Yueying; Norris, Matthew; Chen, Xiaoxi; Cheema, Jitender; Zhang, Huakun; Ding, Yiliang (4 January 2021). "In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants". Genome Biology. 22 (1): 11. doi: 10.1186/s13059-020-02236-4. ISSN 1474-760X. PMC 7784297. PMID 33397430.
- ^ "G-quadruplex structures trigger RNA phase separation". academic.oup.com. Retrieved 10 August 2023.
- ^ "Rice In Vivo RNA Structurome Reveals RNA Secondary Structure Conservation and Divergence in Plants" (PDF). Molecular Plant.
- ^ "Intact RNA structurome reveals mRNA structure-mediated regulation of miRNA cleavage in vivo". Retrieved 10 August 2023.
- ^ Yang, Xiaofei; Cheema, Jitender; Zhang, Yueying; Deng, Hongjing; Duncan, Susan; Umar, Mubarak Ishaq; Zhao, Jieyu; Liu, Qi; Cao, Xiaofeng; Kwok, Chun Kit; Ding, Yiliang (1 September 2020). "RNA G-quadruplex structures exist and function in vivo in plants". Genome Biology. 21 (1): 226. doi: 10.1186/s13059-020-02142-9. ISSN 1474-760X. PMC 7466424. PMID 32873317.
- ^ Yang, Xiaofei; Yu, Haopeng; Duncan, Susan; Zhang, Yueying; Cheema, Jitender; Liu, Haifeng; Benjamin Miller, J.; Zhang, Jie; Kwok, Chun Kit; Zhang, Huakun; Ding, Yiliang (20 October 2022). "RNA G-quadruplex structure contributes to cold adaptation in plants". Nature Communications. 13 (1): 6224. doi: 10.1038/s41467-022-34040-y. ISSN 2041-1723. PMC 9585020. PMID 36266343.
- ^ Yang, Minglei; Zhu, Pan; Cheema, Jitender; Bloomer, Rebecca; Mikulski, Pawel; Liu, Qi; Zhang, Yueying; Dean, Caroline; Ding, Yiliang (September 2022). "In vivo single-molecule analysis reveals COOLAIR RNA structural diversity". Nature. 609 (7926): 394–399. doi: 10.1038/s41586-022-05135-9. ISSN 1476-4687. PMC 9452300. PMID 35978193.
- ^ Foundation, Blavatnik Family (28 February 2024). "Nine UK Scientists Celebrated at 7th Annual Blavatnik Awards". Blavatnik Family Foundation. Retrieved 17 July 2024.
Yiliang Ding | |
|---|---|
|
| |
| Born | September 8, 1982 |
| Nationality | Chinese |
| Education |
Shanghai Jiao Tong University University of East Anglia |
| Scientific career | |
| Fields |
RNA Biology Plant Biology |
| Institutions | John Innes Centre University of East Anglia |
| Doctoral advisor | Giles Oldroyd |
| Website |
www |
Yiliang Ding has been a group leader with tenure at the John Innes Centre since 2014, working on the functional roles of the RNA structure in living cells. [1] [2] She has also been an Honorary Group Leader at the Babraham Institute and an Honorary Professor at the University of East Anglia since 2024.
`
Yiliang spent two months in the lab of David Lilley at the University of Dundee between November and December 2009. [3] Prior to her move to the John Innes Centre as a group leader, Yiliang worked as a Postdoctoral Scholar at Penn State University, where she worked on the structural folding of RNA under the Human Frontier Science Program Grant from 2010 to 2013. Yiliang obtained the David Phillips Fellowship and started her own group at the John Innes Centre in 2014. She was granted tenure at the John Innes Centre in 2019. Yiliang's group researches RNA structure and post-transcriptional gene regulations. Her group’s research on nucleic acid chemistry and RNA biology focuses on understanding the dynamics of RNA structure in living cells. Yiliang develops new approaches for revealing in vivo RNA structurome. In particular her work on a high throughput method, Structure-seq, to analyse one of the first two genome-wide in vivo RNA structure maps, was published in Nature in 2013. [4] This paper "In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features" has been widely cited [5] [6] [7] as a method for in vivo RNA structural analysis. [8]
Since 2014, Yiliang's group has been studying the functional roles of RNA structure in diverse biological processes such as mRNA processing (splicing and polyadenylation), [9] phase separation, [10] translation, [11] and RNA degradation. [12] Yiliang's group has also developed new methods to reveal the existence of tertiary RNA G-quadruplex structures in eukaryotes [13] and uncovered that RNA G-quadruplex structure serves as a molecular marker to facilitate plant adaptation to the cold during evolution. [14] Recently, Yiliang's group has developed the single-molecule RNA structure profiling method that is capable of dissecting individual RNA structure conformation in living cells for the first time. The group revealed the functional importance of RNA structure in long noncoding RNAs. [15] She is a member of the editorial board of Nucleic Acids Research.
In January 2024 Yiliang Ding was one of the nine recipients of the 2024 Blavatnik Awards for Young Scientists in the UK [16] and is the first UK plant scientist to receive the award.
- ^ "Five new Project Leaders join the John Innes Centre". John Innes Centre. 14 November 2014. Retrieved 10 August 2023.
- ^ "Dr Yiliang Ding". John Innes Centre. 30 November 2018. Retrieved 10 August 2023.
- ^ "Professor David Lilley". University of Dundee. Retrieved 10 August 2023.
- ^ Assmann, Sarah M.; Bevilacqua, Philip C.; Yu Zhang; Kwok, Chun Kit; Tang, Yin; Ding, Yiliang (January 2014). "In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features". Nature. 505 (7485): 696–700. Bibcode: 2014Natur.505..696D. doi: 10.1038/nature12756. ISSN 1476-4687. PMID 24270811. S2CID 205236375.
- ^ Van Dijk, Erwin L.; Auger, Hélène; Jaszczyszyn, Yan; Thermes, Claude (September 2014). "Ten years of next-generation sequencing technology". Trends in Genetics. 30 (9): 418–426. doi: 10.1016/j.tig.2014.07.001. PMID 25108476.
- ^ Tuschl, Thomas; Hafner, Markus; Gerstberger, Stefanie (December 2014). "A census of human RNA-binding proteins". Nature Reviews Genetics. 15 (12): 829–845. doi: 10.1038/nrg3813. ISSN 1471-0064. PMC 11148870. PMID 25365966. S2CID 7882934.
- ^ Pan, Tao; Parisien, Marc; Chuan He; Zheng, Guanqun; Dai, Qing; Liu, Nian (February 2015). "N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions". Nature. 518 (7540): 560–564. Bibcode: 2015Natur.518..560L. doi: 10.1038/nature14234. ISSN 1476-4687. PMC 4355918. PMID 25719671.
- ^ "Google Scholar User Profile". Google Scholar. Retrieved 17 December 2019.
- ^ Liu, Zhenshan; Liu, Qi; Yang, Xiaofei; Zhang, Yueying; Norris, Matthew; Chen, Xiaoxi; Cheema, Jitender; Zhang, Huakun; Ding, Yiliang (4 January 2021). "In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants". Genome Biology. 22 (1): 11. doi: 10.1186/s13059-020-02236-4. ISSN 1474-760X. PMC 7784297. PMID 33397430.
- ^ "G-quadruplex structures trigger RNA phase separation". academic.oup.com. Retrieved 10 August 2023.
- ^ "Rice In Vivo RNA Structurome Reveals RNA Secondary Structure Conservation and Divergence in Plants" (PDF). Molecular Plant.
- ^ "Intact RNA structurome reveals mRNA structure-mediated regulation of miRNA cleavage in vivo". Retrieved 10 August 2023.
- ^ Yang, Xiaofei; Cheema, Jitender; Zhang, Yueying; Deng, Hongjing; Duncan, Susan; Umar, Mubarak Ishaq; Zhao, Jieyu; Liu, Qi; Cao, Xiaofeng; Kwok, Chun Kit; Ding, Yiliang (1 September 2020). "RNA G-quadruplex structures exist and function in vivo in plants". Genome Biology. 21 (1): 226. doi: 10.1186/s13059-020-02142-9. ISSN 1474-760X. PMC 7466424. PMID 32873317.
- ^ Yang, Xiaofei; Yu, Haopeng; Duncan, Susan; Zhang, Yueying; Cheema, Jitender; Liu, Haifeng; Benjamin Miller, J.; Zhang, Jie; Kwok, Chun Kit; Zhang, Huakun; Ding, Yiliang (20 October 2022). "RNA G-quadruplex structure contributes to cold adaptation in plants". Nature Communications. 13 (1): 6224. doi: 10.1038/s41467-022-34040-y. ISSN 2041-1723. PMC 9585020. PMID 36266343.
- ^ Yang, Minglei; Zhu, Pan; Cheema, Jitender; Bloomer, Rebecca; Mikulski, Pawel; Liu, Qi; Zhang, Yueying; Dean, Caroline; Ding, Yiliang (September 2022). "In vivo single-molecule analysis reveals COOLAIR RNA structural diversity". Nature. 609 (7926): 394–399. doi: 10.1038/s41586-022-05135-9. ISSN 1476-4687. PMC 9452300. PMID 35978193.
- ^ Foundation, Blavatnik Family (28 February 2024). "Nine UK Scientists Celebrated at 7th Annual Blavatnik Awards". Blavatnik Family Foundation. Retrieved 17 July 2024.