Bacillus safensis | |
---|---|
Scientific classification | |
Kingdom: | |
Division: | |
Class: | |
Order: | |
Family: | |
Genus: | |
Species: | B. safensis
|
Binomial name | |
Bacillus safensis |
This article was the subject of an educational assignment in Spring 2014. Further details were available on the "Education Program:Louisiana State University/Prokaryotic Diversity (Spring 2014)" page, which is now unavailable on the wiki. |
Bacillus safensis is a
Gram-positive,
spore-forming, and
rod bacterium, originally isolated from a
spacecraft in
Florida and
California.
[1] Bacillus safensis could have possibly been transported to the planet
Mars on spacecraft
Opportunity and
Spirit in 2004.
[1] There are several known strains of this bacteria, all of which belong to the
Firmicutes phylum of
Bacteria.
[1] This bacterium also belongs to the large, pervasive genus Bacillus. Bacillus safensis is an
aerobic
chemoheterotroph and is highly resistant to
salt
[2] ,
UV radiation, and
gamma radiation.
[3] Because of these features, Bacillus safensis is a powerful plant
hormone producer. The bacteria is also a plant growth-promoting
rhizobacteria, which enhances plant growth after root colonization.
[2]
Thirteen strains of the novel bacterium, Bacillus safensis, were first isolated from spacecraft surfaces and assembly-facility surfaces at the Kennedy Space Center in Florida as well as the NASA Jet Propulsion Laboratory in California. The bacteria get its name from the Spacecraft Assembly Facility (SAF). [1] Researchers used customary swabbing techniques to detect and collect the bacteria from cleanrooms where the spacecraft were put together in the Jet Propulsion Laboratory. [1] The bacterium was accidentally brought to Mars during space travel missions due to contamination of clean rooms. Contamination of clean rooms during space travel is an area of concern as it can threaten microbial experimentation and give false positives of other microbial life forms on other planets. [4]
V.V. Kothari and his colleagues from Saurashtra University in Gujarat, India first isolated another strain, Bacillus safensis VK. [2] Strain VK was collected from Cuminum cyminum, a cumin plant in the desert area of Gujarat, India. [2] Specifically, the bacteria were collected from the rhizosphere of the cumin plant. [2]
Ram S. Singh and colleagues discovered one of the strains, AS-08 in soil samples of root tubers of asparagus plants in a botanical garden at Punjabi University in India. [5] Bacillus safensis AS-08 was found to have inulase activity, which is used for the production of fructooligosaccharides and high-fructose corn syrup. [5] Fructooligosaccharides are used as artificial sweeteners and can be found in many commercial food products. Corn syrup is also found in many processed foods. [5]
Davender Kumar and colleagues from Kurukshetra University in India isolated strain DVL-43 from soil samples. [3] This strain was found to possess lipase, which is an important enzyme for fat digestion. Lipases are a class of chemicals that are abundant in nature amongst plants, animals and microorganisms that are widely used in industry for production of food, paper products, detergents and biodiesel fuel. [3]
Bacillus safensis is a Gram-positive, spore-forming rod bacterium. Bacillus safensis is also an aerobic, chemoheterotroph. Cell size ranges from 0.5-0.7 μm in diameter and 1.0-1.2 μm in length. [1] Bacteria are motile, and use polar flagella for locomotion. Cells are considered mesophillic, as they can grow in temperatures ranging between 10-50° C. [1] Bacillus safensis FO-036b has an optimal temperature range from 30-37° C, and cannot grow at 4 or 55° C. [1] Bacillus safensis FO-036b prefers 0-10% salt, and a pH of 5.6. This strain was also found to produce spores that are resistant to hydrogen peroxide and UV radiation. [6]
Strain VK of Bacillus safensis is a salt-tolerant microbe, and can grow beyond the 0-10% salt range for the general microbial species. [2] This strain can grow in 14% NaCl, with a pH ranging from 4 to 8. [2] Strain VK also contains genes that encode for 1-aminocyclopropane-1-carboxylate deaminase enzyme. [2] This enzyme is able to generate 2-oxobutanoate and ammonia (NH3) by cleaving the precursor of plant hormone, ethylene 1-aminocyclopropane-1-carboxylate. [2] This enables the plant to tolerate salt, heavy metals, and polyaromatic hydrocarbons. [2] Because of these features, Bacillus safensis VK is a powerful plant hormone producer.
The genome of Bacillus safensis strain FO-036b shows a GC content of 41.0-41.4 mol%. [1]
The Bacillus safensis VK genomic DNA was obtained from a 24-hr-old nutrient broth culture. Isolation of this strain was performed using a GenElute commercial DNA isolation kit, and whole-genome shotgun sequencing was carried out. Thirty-nine contigs, overlapping DNA fragments, greater in size than 200 base pairs were observed in strain VK. [2]This strain displays a G+C content of 46.1% in a circular chromosome of 3.68 Mb. 3,928 protein-coding sequences were identified, and 1,822 protein-coding sequences were appointed to one of the 457 RAST subsystems. [2] RAST, Rapid Annotation using Subsystem Technology, is a server that generates bacterial and archaeal genome annotations. [7] The genome also displays 73 tRNA genes. [2]Bacillus safensis VK genome sequence can be found in GenBank under the accession number AUPF00000000. [2] Another strain, DVL-43, can also be found in GenBank under the accession number KC156603. [3]
Listed below are currently identified Bacillus safensis strains, including where they were discovered, and the year discovered (if available). [8]
Several isolates of the genus Bacillus are nearly identical to Bacillus pumilus. The group of isolates related to B. pumilus contains five related species: B. pumilus, B. safensis, B. stratosphericus, B. altitudinis, and B. aerophilus. These species are difficult to distinguish to due to their 99.5% similarity in their 16S rRNA gene sequence. Recently, scientists have discovered an alternate way to differentiate between these closely related species, especially B. pumilus and B. safensis. [9]
DNA gyrase is an important enzyme that introduces a negative supercoil to the DNA and is responsible for the biological processes in DNA replication and transcription. [9] DNA gyrase is made of two subunits, A and B. These subunits are denoted as gyrA and gyrB. The gyrB gene, subunit B protein, is a type II topoisomerase that is essential for DNA replication. [9] This gene is conserved among bacterial species. The rate of evolution at the molecular level deduced from gyrB related gene sequences can be determined at more accelerated rate compared to the 16S rRNA gene sequences. [9] These subunits have provided a way to phylogenetically distinguish between the diversity of species related to B. pumilus, which includes B. safensis. Strain B. safensis DSM19292 shares 90.2% gyrA sequence similarity with B. pumilus strain DSM 27. [9]
In 1952, a strain of B. pumilus was discovered in the DSMZ culture and labeled as strain DSM 354. [9] The strain was identified before B. safensis was discovered. In 2012, a gyrA sequence similarity was tested between the B. pumilus strain DSM 354 B. pumilus strain DSM 27, as well as against B. safensis strain DSM 19292. [9] Strain DSM 354 showed a 90.4% and 98% sequence similarity with B. pumilus strain DSM 27 and B. safensis strain DSM 19292, respectively. [9] These results indicated that DSM 354 may in fact be a B. safensis strain, instead of a B. pumilus strain. These results supported that gyrA sequences could be used to differentiate between closely related bacteria. [9]
<references>
{{
cite journal}}
: CS1 maint: unflagged free DOI (
link)
{{
cite journal}}
: Check |url=
value (
help)
Bacillus safensis | |
---|---|
Scientific classification | |
Kingdom: | |
Division: | |
Class: | |
Order: | |
Family: | |
Genus: | |
Species: | B. safensis
|
Binomial name | |
Bacillus safensis |
This article was the subject of an educational assignment in Spring 2014. Further details were available on the "Education Program:Louisiana State University/Prokaryotic Diversity (Spring 2014)" page, which is now unavailable on the wiki. |
Bacillus safensis is a
Gram-positive,
spore-forming, and
rod bacterium, originally isolated from a
spacecraft in
Florida and
California.
[1] Bacillus safensis could have possibly been transported to the planet
Mars on spacecraft
Opportunity and
Spirit in 2004.
[1] There are several known strains of this bacteria, all of which belong to the
Firmicutes phylum of
Bacteria.
[1] This bacterium also belongs to the large, pervasive genus Bacillus. Bacillus safensis is an
aerobic
chemoheterotroph and is highly resistant to
salt
[2] ,
UV radiation, and
gamma radiation.
[3] Because of these features, Bacillus safensis is a powerful plant
hormone producer. The bacteria is also a plant growth-promoting
rhizobacteria, which enhances plant growth after root colonization.
[2]
Thirteen strains of the novel bacterium, Bacillus safensis, were first isolated from spacecraft surfaces and assembly-facility surfaces at the Kennedy Space Center in Florida as well as the NASA Jet Propulsion Laboratory in California. The bacteria get its name from the Spacecraft Assembly Facility (SAF). [1] Researchers used customary swabbing techniques to detect and collect the bacteria from cleanrooms where the spacecraft were put together in the Jet Propulsion Laboratory. [1] The bacterium was accidentally brought to Mars during space travel missions due to contamination of clean rooms. Contamination of clean rooms during space travel is an area of concern as it can threaten microbial experimentation and give false positives of other microbial life forms on other planets. [4]
V.V. Kothari and his colleagues from Saurashtra University in Gujarat, India first isolated another strain, Bacillus safensis VK. [2] Strain VK was collected from Cuminum cyminum, a cumin plant in the desert area of Gujarat, India. [2] Specifically, the bacteria were collected from the rhizosphere of the cumin plant. [2]
Ram S. Singh and colleagues discovered one of the strains, AS-08 in soil samples of root tubers of asparagus plants in a botanical garden at Punjabi University in India. [5] Bacillus safensis AS-08 was found to have inulase activity, which is used for the production of fructooligosaccharides and high-fructose corn syrup. [5] Fructooligosaccharides are used as artificial sweeteners and can be found in many commercial food products. Corn syrup is also found in many processed foods. [5]
Davender Kumar and colleagues from Kurukshetra University in India isolated strain DVL-43 from soil samples. [3] This strain was found to possess lipase, which is an important enzyme for fat digestion. Lipases are a class of chemicals that are abundant in nature amongst plants, animals and microorganisms that are widely used in industry for production of food, paper products, detergents and biodiesel fuel. [3]
Bacillus safensis is a Gram-positive, spore-forming rod bacterium. Bacillus safensis is also an aerobic, chemoheterotroph. Cell size ranges from 0.5-0.7 μm in diameter and 1.0-1.2 μm in length. [1] Bacteria are motile, and use polar flagella for locomotion. Cells are considered mesophillic, as they can grow in temperatures ranging between 10-50° C. [1] Bacillus safensis FO-036b has an optimal temperature range from 30-37° C, and cannot grow at 4 or 55° C. [1] Bacillus safensis FO-036b prefers 0-10% salt, and a pH of 5.6. This strain was also found to produce spores that are resistant to hydrogen peroxide and UV radiation. [6]
Strain VK of Bacillus safensis is a salt-tolerant microbe, and can grow beyond the 0-10% salt range for the general microbial species. [2] This strain can grow in 14% NaCl, with a pH ranging from 4 to 8. [2] Strain VK also contains genes that encode for 1-aminocyclopropane-1-carboxylate deaminase enzyme. [2] This enzyme is able to generate 2-oxobutanoate and ammonia (NH3) by cleaving the precursor of plant hormone, ethylene 1-aminocyclopropane-1-carboxylate. [2] This enables the plant to tolerate salt, heavy metals, and polyaromatic hydrocarbons. [2] Because of these features, Bacillus safensis VK is a powerful plant hormone producer.
The genome of Bacillus safensis strain FO-036b shows a GC content of 41.0-41.4 mol%. [1]
The Bacillus safensis VK genomic DNA was obtained from a 24-hr-old nutrient broth culture. Isolation of this strain was performed using a GenElute commercial DNA isolation kit, and whole-genome shotgun sequencing was carried out. Thirty-nine contigs, overlapping DNA fragments, greater in size than 200 base pairs were observed in strain VK. [2]This strain displays a G+C content of 46.1% in a circular chromosome of 3.68 Mb. 3,928 protein-coding sequences were identified, and 1,822 protein-coding sequences were appointed to one of the 457 RAST subsystems. [2] RAST, Rapid Annotation using Subsystem Technology, is a server that generates bacterial and archaeal genome annotations. [7] The genome also displays 73 tRNA genes. [2]Bacillus safensis VK genome sequence can be found in GenBank under the accession number AUPF00000000. [2] Another strain, DVL-43, can also be found in GenBank under the accession number KC156603. [3]
Listed below are currently identified Bacillus safensis strains, including where they were discovered, and the year discovered (if available). [8]
Several isolates of the genus Bacillus are nearly identical to Bacillus pumilus. The group of isolates related to B. pumilus contains five related species: B. pumilus, B. safensis, B. stratosphericus, B. altitudinis, and B. aerophilus. These species are difficult to distinguish to due to their 99.5% similarity in their 16S rRNA gene sequence. Recently, scientists have discovered an alternate way to differentiate between these closely related species, especially B. pumilus and B. safensis. [9]
DNA gyrase is an important enzyme that introduces a negative supercoil to the DNA and is responsible for the biological processes in DNA replication and transcription. [9] DNA gyrase is made of two subunits, A and B. These subunits are denoted as gyrA and gyrB. The gyrB gene, subunit B protein, is a type II topoisomerase that is essential for DNA replication. [9] This gene is conserved among bacterial species. The rate of evolution at the molecular level deduced from gyrB related gene sequences can be determined at more accelerated rate compared to the 16S rRNA gene sequences. [9] These subunits have provided a way to phylogenetically distinguish between the diversity of species related to B. pumilus, which includes B. safensis. Strain B. safensis DSM19292 shares 90.2% gyrA sequence similarity with B. pumilus strain DSM 27. [9]
In 1952, a strain of B. pumilus was discovered in the DSMZ culture and labeled as strain DSM 354. [9] The strain was identified before B. safensis was discovered. In 2012, a gyrA sequence similarity was tested between the B. pumilus strain DSM 354 B. pumilus strain DSM 27, as well as against B. safensis strain DSM 19292. [9] Strain DSM 354 showed a 90.4% and 98% sequence similarity with B. pumilus strain DSM 27 and B. safensis strain DSM 19292, respectively. [9] These results indicated that DSM 354 may in fact be a B. safensis strain, instead of a B. pumilus strain. These results supported that gyrA sequences could be used to differentiate between closely related bacteria. [9]
<references>
{{
cite journal}}
: CS1 maint: unflagged free DOI (
link)
{{
cite journal}}
: Check |url=
value (
help)