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It should start with a definition for codon usage bias, with the words in boldface. I can't see why this isn't possible. Richard001 ( talk) 08:29, 14 August 2008 (UTC)
The codons are redundant and degenerate. This is because each unique codon, encodes a SINGLE amino acid; but most of the 20 amino acids are coded for by more than one codon. Enzymes-GMU ( talk) 17:20, 18 September 2009 (UTC)
There is no mention here of histone wrapping as another factor in codon selection. — Preceding unsigned comment added by 2601:242:C201:7890:D13D:D071:2DCC:9F77 ( talk) 05:15, 23 January 2017 (UTC)
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There was a sequence logo from a methods paper by Dutihl, et al https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129529/ that is completely extraneous to this article. The logo condenses a lot of amino acid profiles from an automated gene-identification system. It has nothing to do with codon usage bias. Dabs ( talk) 18:07, 29 August 2019 (UTC)
This article does not mention biased gene conversion anywhere. The theory section does not reflect the literature from the past 15 years. The mutation-selection-drift model [1] was a prevailing view until the late 1990s when evidence for biased gene conversion began to accumulate. Dabs ( talk) 18:38, 29 August 2019 (UTC)
Suggested revision
Some sources
Duret L. Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion. Mol Biol Evol. 2018 May 1;35(5):1092-1103. doi: 10.1093/molbev/msy015. PubMed PMID: 29390090.
Recombination and GC-biased Gene Conversion on the Adaptive and Nonadaptive Substitution Rate in Mammals versus Birds. Mol Biol Evol. 2019 Mar 1;36(3):458-471. doi: 10.1093/molbev/msy243. PubMed PMID: 30590692; PubMed Central PMCID: PMC6389324.
methods and genome-wide patterns: with emphasis on insect genomes. Biol Rev Camb Philos Soc. 2013 Feb;88(1):49-61. doi: 10.1111/j.1469-185X.2012.00242.x. Epub 2012 Aug 14. Review. PubMed PMID: 22889422.
Ribosome. J Mol Biol. 2018 Oct 26;430(22):4580-4591. doi: 10.1016/j.jmb.2018.06.050. Epub 2018 Jul 5. Review. PubMed PMID: 29981746; PubMed Central PMCID: PMC6384192.
References
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link)
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cite journal}}
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link)
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cite journal}}
: CS1 maint: multiple names: authors list (
link)
This article is rated B-class on Wikipedia's
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It should start with a definition for codon usage bias, with the words in boldface. I can't see why this isn't possible. Richard001 ( talk) 08:29, 14 August 2008 (UTC)
The codons are redundant and degenerate. This is because each unique codon, encodes a SINGLE amino acid; but most of the 20 amino acids are coded for by more than one codon. Enzymes-GMU ( talk) 17:20, 18 September 2009 (UTC)
There is no mention here of histone wrapping as another factor in codon selection. — Preceding unsigned comment added by 2601:242:C201:7890:D13D:D071:2DCC:9F77 ( talk) 05:15, 23 January 2017 (UTC)
Hello fellow Wikipedians,
I have just modified one external link on Codon usage bias. Please take a moment to review my edit. If you have any questions, or need the bot to ignore the links, or the page altogether, please visit this simple FaQ for additional information. I made the following changes:
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Cheers.— InternetArchiveBot ( Report bug) 05:31, 10 August 2017 (UTC)
There was a sequence logo from a methods paper by Dutihl, et al https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129529/ that is completely extraneous to this article. The logo condenses a lot of amino acid profiles from an automated gene-identification system. It has nothing to do with codon usage bias. Dabs ( talk) 18:07, 29 August 2019 (UTC)
This article does not mention biased gene conversion anywhere. The theory section does not reflect the literature from the past 15 years. The mutation-selection-drift model [1] was a prevailing view until the late 1990s when evidence for biased gene conversion began to accumulate. Dabs ( talk) 18:38, 29 August 2019 (UTC)
Suggested revision
Some sources
Duret L. Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion. Mol Biol Evol. 2018 May 1;35(5):1092-1103. doi: 10.1093/molbev/msy015. PubMed PMID: 29390090.
Recombination and GC-biased Gene Conversion on the Adaptive and Nonadaptive Substitution Rate in Mammals versus Birds. Mol Biol Evol. 2019 Mar 1;36(3):458-471. doi: 10.1093/molbev/msy243. PubMed PMID: 30590692; PubMed Central PMCID: PMC6389324.
methods and genome-wide patterns: with emphasis on insect genomes. Biol Rev Camb Philos Soc. 2013 Feb;88(1):49-61. doi: 10.1111/j.1469-185X.2012.00242.x. Epub 2012 Aug 14. Review. PubMed PMID: 22889422.
Ribosome. J Mol Biol. 2018 Oct 26;430(22):4580-4591. doi: 10.1016/j.jmb.2018.06.050. Epub 2018 Jul 5. Review. PubMed PMID: 29981746; PubMed Central PMCID: PMC6384192.
References
{{
cite journal}}
: CS1 maint: unflagged free DOI (
link)
{{
cite journal}}
: CS1 maint: multiple names: authors list (
link)
{{
cite journal}}
: CS1 maint: multiple names: authors list (
link)