| Small Cajal body specific RNA 14 | |
|---|---|
 Predicted
secondary structure and
sequence conservation of SCARNA14 | |
| Identifiers | |
| Symbol | SCARNA14 |
| Alt. Symbols | snoU100 |
| Rfam | RF00582 |
| Other data | |
| RNA type | Gene; snRNA; snoRNA; scaRNA |
| Domain(s) | Eukaryota |
| GO | GO:0006396 GO:0015030 GO:0005730 |
| SO | SO:0000275 |
| PDB structures | PDBe |
In molecular biology, Small Cajal body specific RNA 14 (also known as scaRNA14 or U100) is a small nucleolar RNA found in Cajal bodies.
scaRNAs are a specific class of small nucleolar RNAs which localise to the Cajal bodies and guide the modification of RNA polymerase II transcribed spliceosomal RNAs U1, U2, U4, U5 and U12. [1] [2] U100 belongs to the H/ACA box class of guide RNAs as it has the predicted hairpin-hinge-hairpin-tail structure and the conserved H/ACA-box motifs. [3]
U100 is the human orthologue of mouse H/ACA snoRNA MBII-201 which is also included in this family. [4] U100 is predicted to guide the pseudouridylation of U2 snRNA at residue U7. [5]
References
- ^ Darzacq X, Jády BE, Verheggen C, Kiss AM, Bertrand E, Kiss T (June 2002). "Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs". The EMBO Journal. 21 (11): 2746–56. doi: 10.1093/emboj/21.11.2746. PMC 126017. PMID 12032087.
- ^ Lestrade L, Weber MJ (January 2006). "snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs". Nucleic Acids Research. 34 (Database issue): D158-62. CiteSeerX 10.1.1.105.7552. doi: 10.1093/nar/gkj002. PMC 1347365. PMID 16381836.
- ^ Vitali P, Royo H, Seitz H, Bachellerie JP, Hüttenhofer A, Cavaillé J (November 2003). "Identification of 13 novel human modification guide RNAs". Nucleic Acids Research. 31 (22): 6543–51. doi: 10.1093/nar/gkg849. PMC 275545. PMID 14602913.
- ^ Hüttenhofer A, Kiefmann M, Meier-Ewert S, O'Brien J, Lehrach H, Bachellerie JP, Brosius J (June 2001). "RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse". The EMBO Journal. 20 (11): 2943–53. doi: 10.1093/emboj/20.11.2943. PMC 125495. PMID 11387227.
- ^ Schattner P, Barberan-Soler S, Lowe TM (January 2006). "A computational screen for mammalian pseudouridylation guide H/ACA RNAs". RNA. 12 (1): 15–25. doi: 10.1261/rna.2210406. PMC 1370881. PMID 16373490.
External links
 | This molecular or cell biology article is a stub. You can help Wikipedia by expanding it. |
| Small Cajal body specific RNA 14 | |
|---|---|
|
Predicted
secondary structure and
sequence conservation of SCARNA14 | |
| Identifiers | |
| Symbol | SCARNA14 |
| Alt. Symbols | snoU100 |
| Rfam | RF00582 |
| Other data | |
| RNA type | Gene; snRNA; snoRNA; scaRNA |
| Domain(s) | Eukaryota |
| GO | GO:0006396 GO:0015030 GO:0005730 |
| SO | SO:0000275 |
| PDB structures | PDBe |
In molecular biology, Small Cajal body specific RNA 14 (also known as scaRNA14 or U100) is a small nucleolar RNA found in Cajal bodies.
scaRNAs are a specific class of small nucleolar RNAs which localise to the Cajal bodies and guide the modification of RNA polymerase II transcribed spliceosomal RNAs U1, U2, U4, U5 and U12. [1] [2] U100 belongs to the H/ACA box class of guide RNAs as it has the predicted hairpin-hinge-hairpin-tail structure and the conserved H/ACA-box motifs. [3]
U100 is the human orthologue of mouse H/ACA snoRNA MBII-201 which is also included in this family. [4] U100 is predicted to guide the pseudouridylation of U2 snRNA at residue U7. [5]
References
- ^ Darzacq X, Jády BE, Verheggen C, Kiss AM, Bertrand E, Kiss T (June 2002). "Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs". The EMBO Journal. 21 (11): 2746–56. doi: 10.1093/emboj/21.11.2746. PMC 126017. PMID 12032087.
- ^ Lestrade L, Weber MJ (January 2006). "snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs". Nucleic Acids Research. 34 (Database issue): D158-62. CiteSeerX 10.1.1.105.7552. doi: 10.1093/nar/gkj002. PMC 1347365. PMID 16381836.
- ^ Vitali P, Royo H, Seitz H, Bachellerie JP, Hüttenhofer A, Cavaillé J (November 2003). "Identification of 13 novel human modification guide RNAs". Nucleic Acids Research. 31 (22): 6543–51. doi: 10.1093/nar/gkg849. PMC 275545. PMID 14602913.
- ^ Hüttenhofer A, Kiefmann M, Meier-Ewert S, O'Brien J, Lehrach H, Bachellerie JP, Brosius J (June 2001). "RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse". The EMBO Journal. 20 (11): 2943–53. doi: 10.1093/emboj/20.11.2943. PMC 125495. PMID 11387227.
- ^ Schattner P, Barberan-Soler S, Lowe TM (January 2006). "A computational screen for mammalian pseudouridylation guide H/ACA RNAs". RNA. 12 (1): 15–25. doi: 10.1261/rna.2210406. PMC 1370881. PMID 16373490.
External links
|
| This molecular or cell biology article is a stub. You can help Wikipedia by expanding it. |