RcsR1 sRNA | |
---|---|
![]() Predicted
secondary structure and
sequence conservation of RcsR1 small RNA | |
Identifiers | |
Rfam | RF02552 |
Other data | |
Domain(s) | Bacteria |
GO | GO:0040033, SO:0032055 |
SO | SO:0000370 |
PDB structures | PDBe |
RcsR1 (rhizobial cold and salinity stress riboregulator 1) trans-acting sRNA, formerly known as SmelC587, is a stress-related riboregulator, conserved in Sinorhizobium, Rhizobium and Agrobacterium. It contains highly conserved stem-loops involved in the interaction with several target mRNAs (PhoR, MotE, anti-σE1, GntR, FgA, TrpC). In Sinorhizobium meliloti RcsR1 less conserved central region is responsible for the species-specific interaction with the 5’UTR of autoinducer synthase encoding mRNA sinI. The interaction negatively influences sinI translation. [1]
RcsR1 sRNA | |
---|---|
![]() Predicted
secondary structure and
sequence conservation of RcsR1 small RNA | |
Identifiers | |
Rfam | RF02552 |
Other data | |
Domain(s) | Bacteria |
GO | GO:0040033, SO:0032055 |
SO | SO:0000370 |
PDB structures | PDBe |
RcsR1 (rhizobial cold and salinity stress riboregulator 1) trans-acting sRNA, formerly known as SmelC587, is a stress-related riboregulator, conserved in Sinorhizobium, Rhizobium and Agrobacterium. It contains highly conserved stem-loops involved in the interaction with several target mRNAs (PhoR, MotE, anti-σE1, GntR, FgA, TrpC). In Sinorhizobium meliloti RcsR1 less conserved central region is responsible for the species-specific interaction with the 5’UTR of autoinducer synthase encoding mRNA sinI. The interaction negatively influences sinI translation. [1]