Legend of nucleobases | |
---|---|
Code | Nucleotide represented |
A | Adenine (A) |
C | Cytosine (C) |
G | Guanine (G) |
T | Thymine (T) |
N | A, C, G or T |
M | A or C |
R | A or G |
W | A or T |
Y | C or T |
S | C or G |
K | G or T |
H | A, C or T |
B | C, G or T |
V | A, C or G |
D | A, G or T |
This article contains a list of the most studied restriction enzymes whose names start with T to Z inclusive. It contains approximately 70 enzymes.
The following information is given:
as in this not listed enzyme: | EcoR70I |
Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers |
TaaI | Thermus aquaticus Vn 4-311 | 5' ACNGT 3' TGNCA
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5' ---ACN GT--- 3' 3' ---TG NCA--- 5'
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TaiI | Thermus aquaticus cs1-331 | 5' ACGT 3' TGCA
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5' ---ACGT --- 3' 3' --- TGCA--- 5'
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TaqI | Thermus aquaticus | 5' TCGA 3' AGCT
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5' ---T CGA--- 3' 3' ---AGC T--- 5'
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TaqII | Thermus aquaticus YTI | 5' GACCGA 3' CTGGCT
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5' ---GACCGAN8NNN --- 3' 3' ---CTGGCTN8N NN--- 5'
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Taq52I | Thermus aquaticus YS52 | 5' GCWGC 3' CGWCG
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5' ---G CWGC--- 3' 3' ---CGWC G--- 5'
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AceI, ApeKI, SuiI, TseI | |
TaqXI | Thermus aquaticus | 5' CCWGG 3' GGWCC
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5' ---CC WGG--- 3' 3' ---GGW CC--- 5'
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ApaORI, BseBI, BsiLI, BstNI, BstOI, Bst2UI, MvaI, SleI, SspAI | |
TasI | Thermus aquaticus Vn 4-211 | 5' AATT 3' TTAA
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5' --- AATT--- 3' 3' ---TTAA --- 5'
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TatI | Thermus aquaticus CBA1-331 | 5' WGTACW 3' WCATGW
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5' ---W GTACW--- 3' 3' ---WCATG W--- 5'
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TauI | Thermus aquaticus | 5' GCSGC 3' CGSCG
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5' ---GCSG C--- 3' 3' ---C GSCG--- 5'
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TelI | Tolypothrix elabens | 5' GACNNNGTC 3' CTGNNNCAG
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5' ---GACN NNGTC--- 3' 3' ---CTGNN NCAG--- 5'
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AspI, AtsI, PflFI, PsyI, Tth111I | |
TfiI | Thermus filiformis | 5' GAWTC 3' CTWAG
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5' ---G AWTC--- 3' 3' ---CTWA G--- 5'
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ThaI | Thermoplasma acidophilum | 5' CGCG 3' GCGC
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5' ---CG CG--- 3' 3' ---GC GC--- 5'
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Bpu95I, Bsh1236I, Bsp50I, BstFNI, BstUI, Csp68KVI, FalII, FnuDII | |
TliI | Thermococcus litoralis | 5' CTCGAG 3' GAGCTC
|
5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5'
|
AbrI, BluI, BssHI, MavI, Sau3239I, Sfr274I, StrI, XhoI | |
Tru1I | Thermus ruber RFL1 | 5' TTAA 3' AATT
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5' ---T TAA--- 3' 3' ---AAT T--- 5'
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Tru9I | Thermus ruber 9 | 5' TTAA 3' AATT
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5' ---T TAA--- 3' 3' ---AAT T--- 5'
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Tru201I | Thermus ruber 201 | 5' RGATCY 3' YCTAGR
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5' ---R GATCY--- 3' 3' ---YCTAG R--- 5'
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TscI | Thermus sp. 491A | 5' ACGT 3' TGCA
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5' ---ACGT --- 3' 3' --- TGCA--- 5'
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TseI | Thermus sp. 93170 | 5' GCWGC 3' CGWCG
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5' ---G CWGC--- 3' 3' ---CGWC G--- 5'
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AceI, ApeKI, SuiI, Taq52I | |
Tsp1I | Thermus sp. 1 | 5' ACTGG 3' TGACC
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5' ---ACTGGN --- 3' 3' ---TGAC CN--- 5'
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Tsp32I | Thermus sp. 32 | 5' TCGA 3' AGCT
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5' ---T CGA--- 3' 3' ---AGC T--- 5'
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Tsp32II | Thermus sp. 32 | 5' TCGA 3' AGCT
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5' ---T CGA--- 3' 3' ---AGC T--- 5'
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Tsp45I | Thermus sp. YS45 | 5' GTSAC 3' CASTG
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5' --- GTSAC--- 3' 3' ---CASTG --- 5'
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Tsp49I | Thermus sp. | 5' ACGT 3' TGCA
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5' ---ACGT --- 3' 3' --- TGCA--- 5'
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Tsp509I | Thermus sp. | 5' AATT 3' TTAA
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5' --- AATT--- 3' 3' ---TTAA --- 5'
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TspBI | Thermophilic sp. | 5' CCRYGG 3' GGYRCC
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5' ---C CRYGG--- 3' 3' ---GGYRC C--- 5'
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Tsp4CI | Thermus sp. 4C | 5' ACNGT 3' TGNCA
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5' ---ACN GT--- 3' 3' ---TG NCA--- 5'
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TspDTI | Thermus sp. DT | 5' ATGAA 3' TACTT
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5' ---ATGAAN8NNN --- 3' 3' ---TACTTN8N NN--- 5'
|
— None on May 2010 — | |
TspEI | Thermus sp. 1E | 5' AATT 3' TTAA
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5' --- AATT--- 3' 3' ---TTAA --- 5'
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Tsp8EI | Thermus sp. 8E | 5' GCCN5GGC 3' CGGN5CCG
|
5' ---GCCNNNN NGGC--- 3' 3' ---CGGN NNNNCCG--- 5'
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TspGWI | Thermus sp. GW | 5' ACGGA 3' TGCCT
|
5' ---ACGGAN8NNN --- 3' 3' ---TGCCTN8N NN--- 5'
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TspMI = UthSI | Unidentified thermophile | 5' CCCGGG 3' GGGCCC
|
5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
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AhyI, Cfr9I, EaeAI, EclRI, PaeBI, PspAI, SmaI, XcyI, XmaI, XmaCI | |
TspRI | Thermus sp. R | 5' CASTGNN 3' GTSAC
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5' ---CASTGNN --- 3' 3' --- GTSACNN--- 5'
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Tth111I | Thermus thermophilus 111 | 5' GACNNNGTC 3' CTGNNNCAG
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5' ---GACN NNGTC--- 3' 3' ---CTGNN NCAG--- 5'
|
AspI, AtsI, PflFI, PsyI, TelI | |
Tth111II | Thermus thermophilus 111 | 5' CAARCA 3' GTTYGT
|
5' ---CAARCAN8NNN --- 3' 3' ---GTTYGTN8N NN--- 5'
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TthHB8I | Thermus thermophilus HB8 | 5' TCGA 3' AGCT
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5' ---T CGA--- 3' 3' ---AGC T--- 5'
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Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers |
Uba4009I | Unidentified bacterium A | 5' GGATCC 3' CCTAGG
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5' ---G GATCC--- 3' 3' ---CCTAG G--- 5'
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AccEBI, AliI, ApaCI, AsiI, BamHI, BnaI, BspAAIII, RspLKII, SolI | |
Uba153AI | Unidentified bacterium 153A | 5' CAGCTG 3' GTCGAC
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5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5'
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UbaM39I | Unidentified bacterium M39 | 5' CAGCTG 3' GTCGAC
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5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5'
|
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UnbI | Unidentified bacterium #8 | 5' GGNCC 3' CCNGG
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5' --- GGNCC--- 3' 3' ---CCNGG --- 5'
|
AvcI, BavAII, Bce22I, Bsp1894I, Bsu54I, FmuI, NspIV, UnbI | |
Uur960I | Ureaplasma urealyticum 960 | 5' GCNGC 3' CGNCG
|
5' ---GC NGC--- 3' 3' ---CGN CG--- 5'
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Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers |
Van91I | Vibrio anguillarum RFL91 | 5' CCAN5TGG 3' GGTN5ACC
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5' ---CCANNNN NTGG--- 3' 3' ---GGTN NNNNACC--- 5'
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AccB7I, AcpII, Asp10HII, BasI, Esp1396I, PflBI, PflMI | |
Vha464I | Vibrio harveyi 464 | 5' CTTAAG 3' GAATTC
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5' ---C TTAAG--- 3' 3' ---GAATT C--- 5'
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VneI | Vibrio nereis 18 | 5' GTGCAC 3' CACGTG
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5' ---G TGCAC--- 3' 3' ---CACGT G--- 5'
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Alw44I, ApaLI, SnoI | |
VpaK32I | Vibrio parahaemolyticus 4387-61 | 5' GCTCTTC 3' CGAGAAG
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5' ---GCTCTTCN NNN--- 3' 3' ---CGAGAAGNNNN --- 5'
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VpaK11AI | Vibrio parahaemolyticus 1743 | 5' GGWCC 3' CCWGG
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5' --- GGWCC--- 3' 3' ---CCWGG --- 5'
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Bme216I, CauI, EagMI, FdiI, HgiBI, HgiHIII, SinI, VpaK11BI | |
VpaK11BI | Vibrio parahaemolyticus 1743-1 | 5' GGWCC 3' CCWGG
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5' ---G GWCC--- 3' 3' ---CCWG G--- 5'
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BsrAI, CauI, EagMI, FdiI, HgiBI, HgiJI, SinI, VpaK11AI | |
VspI | Vibrio sp. 343 | 5' ATTAAT 3' TAATTA
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5' ---AT TAAT--- 3' 3' ---TAAT TA--- 5'
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AseI, AsnI, BpoAI, PshBI, Sru4DI |
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Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers | |||
XagI | Xanthobacter agilis Vs 18-132 | 5' CCTN5AGG 3' GGAN5TCC
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5' ---CCTNN NNNAGG--- 3' 3' ---GGANNN NNTCC--- 5'
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XapI | Xanthomonas ampelina Slo 51-021 | 5' RAATTY 3' YTTAAR
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5' ---R AATTY--- 3' 3' ---YTTAA R--- 5'
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XbaI [7] | Xanthomonas badrii | 5' TCTAGA 3' AGATCT
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5' ---T CTAGA--- 3' 3' ---AGATC T--- 5'
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XcaI | Xanthomonas campestris | 5' GTATAC 3' CATATG
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5' ---GTA TAC--- 3' 3' ---CAT ATG--- 5'
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XceI | Xanthomonas campestris Ast 40-024 | 5' RCATGY 3' YGTACR
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5' ---RCATG Y--- 3' 3' ---Y GTACR--- 5'
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XciI | Xanthomonas citri | 5' GTCGAC 3' CAGCTG
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5' ---G TCGAC--- 3' 3' ---CAGCT G--- 5'
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XcmI | Xanthomonas campestris | 5' CCAN9TGG 3' GGTN9ACC
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5' ---CCANNNNN NNNNTGG--- 3' 3' ---GGTNNNN NNNNNACC--- 5'
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XcyI | Xanthomonas cyanopsidis 13D5 | 5' CCCGGG 3' GGGCCC
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5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
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CfrJ4I, EaeAI, EclRI, Pac25I, PspAI, TspMI, XmaI, XmaCI | ||||
XhoI | Xanthomonas holcicola | 5' CTCGAG 3' GAGCTC
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5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5'
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AbrI, BluI, BssHI, PanI, Sau3239I, Sfr274I, TliI, XpaI | ||||
XhoII | Xanthomonas holcicola | 5' RGATCY 3' YCTAGR
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5' ---R GATCY--- 3' 3' ---YCTAG R--- 5'
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XmaI | Xanthomonas malvacearum | 5' CCCGGG 3' GGGCCC
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5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
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AhyI, Cfr9I, EaeAI, EclRI, PaeBI, PspAI, TspMI, XcyI, XmaCI | ||||
XmaIII | Xanthomonas malvacearum | 5' CGGCCG 3' GCCGGC
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5' ---C GGCCG--- 3' 3' ---GCCGG C--- 5'
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AaaI, BseX3I, BstZI, EagI, EclXI, Eco52I, SenPT16I | ||||
XmaCI | Xanthomonas malvacearum C | 5' CCCGGG 3' GGGCCC
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5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
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AhyI, Cfr9I, EaeAI, EclRI, PaeBI, Pac25I, PspAI, TspMI, XcyI, XmaI | ||||
XmaJI | Xanthomonas maltophilia Jo 85-025 | 5' CCTAGG 3' GGATCC
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5' ---C CTAGG--- 3' 3' ---GGATC C--- 5'
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AspA2I, AvrII, AvrBII, BlnI, BspA2I | ||||
XmiI | Xanthomonas maltophilia Jo 21-021 | 5' GTMKAC 3' CAKMTG
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5' ---GT MKAC--- 3' 3' ---CAKM TG--- 5'
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AccI, FblI | ||||
XmnI | Xanthomonas manihotis 7AS1 | 5' GAAN4TTC 3' CTTN4AAG
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5' ---GAANN NNTTC--- 3' 3' ---CTTNN NNAAG--- 5'
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Asp700I, BbvAI, MroXI, PdmI | ||||
XorII | Xanthomonas oryzae | 5' CGATCG 3' GCTAGC
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5' ---CGAT CG--- 3' 3' ---GC TAGC--- 5'
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Afa16RI, BspCI, EagBI, ErhB9I, MvrI, Ple19I, PvuI, RshI | ||||
XpaI | Xanthomonas papavericola | 5' CTCGAG 3' GAGCTC
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5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5'
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BssHI, MavI, PanI, SauLPII, Sbi68I, Sol10179I, StrI, XhoI | ||||
XspI | Xanthomonas sp. YK1 | 5' CTAG 3' GATC
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5' ---C TAG--- 3' 3' ---GAT C--- 5'
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Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers |
YenI | Yersinia enterocolitica 08 A2635 | 5' CTGCAG 3' GACGTC
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5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
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Asp713I, BsuBI, CfrA4I, Ecl37kI, Psp23I, PstI, SalPI, SflI, Sst12I |
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Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers | ||||
ZanI | Zymomonas anaerobia | 5' CCWGG 3' GGWCC
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5' ---CC WGG--- 3' 3' ---GGW CC--- 5'
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ApaORI, BseBI, BspNI, BstNI, Bst2UI, CthII, EcoRII, MvaI, SspAI | |||||
ZhoI | Zymomonas holcicola | 5' ATCGAT 3' TAGCTA
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5' ---AT CGAT--- 3' 3' ---TAGC TA--- 5'
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BanIII, BbvAII, BscI, BspJI, ClaI, LcaI, PgaI, SpmI, Ssp27144I | |||||
ZraI | Zoogloea ramigera 11 | 5' GACGTC 3' CTGCAG
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5' ---GAC GTC--- 3' 3' ---CTG CAG--- 5'
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AatII, Ssp5230I | |||||
ZrmI | Zoogloea ramigera SCA | 5' AGTACT 3' TCATGA
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5' ---AGT ACT--- 3' 3' ---TCA TGA--- 5'
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Zsp2I | Zoogloea sp. 2 | 5' ATGCAT 3' TACGTA
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5' ---ATGCA T--- 3' 3' ---T ACGTA--- 5'
|
BfrBI, Csp68KIII, EcoT22I, NsiI, PinBI, Ppu10I, SepI, SspD5II |
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Legend of nucleobases | |
---|---|
Code | Nucleotide represented |
A | Adenine (A) |
C | Cytosine (C) |
G | Guanine (G) |
T | Thymine (T) |
N | A, C, G or T |
M | A or C |
R | A or G |
W | A or T |
Y | C or T |
S | C or G |
K | G or T |
H | A, C or T |
B | C, G or T |
V | A, C or G |
D | A, G or T |
This article contains a list of the most studied restriction enzymes whose names start with T to Z inclusive. It contains approximately 70 enzymes.
The following information is given:
as in this not listed enzyme: | EcoR70I |
Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers |
TaaI | Thermus aquaticus Vn 4-311 | 5' ACNGT 3' TGNCA
|
5' ---ACN GT--- 3' 3' ---TG NCA--- 5'
|
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TaiI | Thermus aquaticus cs1-331 | 5' ACGT 3' TGCA
|
5' ---ACGT --- 3' 3' --- TGCA--- 5'
|
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TaqI | Thermus aquaticus | 5' TCGA 3' AGCT
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5' ---T CGA--- 3' 3' ---AGC T--- 5'
|
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TaqII | Thermus aquaticus YTI | 5' GACCGA 3' CTGGCT
|
5' ---GACCGAN8NNN --- 3' 3' ---CTGGCTN8N NN--- 5'
|
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Taq52I | Thermus aquaticus YS52 | 5' GCWGC 3' CGWCG
|
5' ---G CWGC--- 3' 3' ---CGWC G--- 5'
|
AceI, ApeKI, SuiI, TseI | |
TaqXI | Thermus aquaticus | 5' CCWGG 3' GGWCC
|
5' ---CC WGG--- 3' 3' ---GGW CC--- 5'
|
ApaORI, BseBI, BsiLI, BstNI, BstOI, Bst2UI, MvaI, SleI, SspAI | |
TasI | Thermus aquaticus Vn 4-211 | 5' AATT 3' TTAA
|
5' --- AATT--- 3' 3' ---TTAA --- 5'
|
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TatI | Thermus aquaticus CBA1-331 | 5' WGTACW 3' WCATGW
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5' ---W GTACW--- 3' 3' ---WCATG W--- 5'
|
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TauI | Thermus aquaticus | 5' GCSGC 3' CGSCG
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5' ---GCSG C--- 3' 3' ---C GSCG--- 5'
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TelI | Tolypothrix elabens | 5' GACNNNGTC 3' CTGNNNCAG
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5' ---GACN NNGTC--- 3' 3' ---CTGNN NCAG--- 5'
|
AspI, AtsI, PflFI, PsyI, Tth111I | |
TfiI | Thermus filiformis | 5' GAWTC 3' CTWAG
|
5' ---G AWTC--- 3' 3' ---CTWA G--- 5'
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ThaI | Thermoplasma acidophilum | 5' CGCG 3' GCGC
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5' ---CG CG--- 3' 3' ---GC GC--- 5'
|
Bpu95I, Bsh1236I, Bsp50I, BstFNI, BstUI, Csp68KVI, FalII, FnuDII | |
TliI | Thermococcus litoralis | 5' CTCGAG 3' GAGCTC
|
5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5'
|
AbrI, BluI, BssHI, MavI, Sau3239I, Sfr274I, StrI, XhoI | |
Tru1I | Thermus ruber RFL1 | 5' TTAA 3' AATT
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5' ---T TAA--- 3' 3' ---AAT T--- 5'
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Tru9I | Thermus ruber 9 | 5' TTAA 3' AATT
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5' ---T TAA--- 3' 3' ---AAT T--- 5'
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Tru201I | Thermus ruber 201 | 5' RGATCY 3' YCTAGR
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5' ---R GATCY--- 3' 3' ---YCTAG R--- 5'
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TscI | Thermus sp. 491A | 5' ACGT 3' TGCA
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5' ---ACGT --- 3' 3' --- TGCA--- 5'
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TseI | Thermus sp. 93170 | 5' GCWGC 3' CGWCG
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5' ---G CWGC--- 3' 3' ---CGWC G--- 5'
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AceI, ApeKI, SuiI, Taq52I | |
Tsp1I | Thermus sp. 1 | 5' ACTGG 3' TGACC
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5' ---ACTGGN --- 3' 3' ---TGAC CN--- 5'
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Tsp32I | Thermus sp. 32 | 5' TCGA 3' AGCT
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5' ---T CGA--- 3' 3' ---AGC T--- 5'
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Tsp32II | Thermus sp. 32 | 5' TCGA 3' AGCT
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5' ---T CGA--- 3' 3' ---AGC T--- 5'
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Tsp45I | Thermus sp. YS45 | 5' GTSAC 3' CASTG
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5' --- GTSAC--- 3' 3' ---CASTG --- 5'
|
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Tsp49I | Thermus sp. | 5' ACGT 3' TGCA
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5' ---ACGT --- 3' 3' --- TGCA--- 5'
|
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Tsp509I | Thermus sp. | 5' AATT 3' TTAA
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5' --- AATT--- 3' 3' ---TTAA --- 5'
|
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TspBI | Thermophilic sp. | 5' CCRYGG 3' GGYRCC
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5' ---C CRYGG--- 3' 3' ---GGYRC C--- 5'
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Tsp4CI | Thermus sp. 4C | 5' ACNGT 3' TGNCA
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5' ---ACN GT--- 3' 3' ---TG NCA--- 5'
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TspDTI | Thermus sp. DT | 5' ATGAA 3' TACTT
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5' ---ATGAAN8NNN --- 3' 3' ---TACTTN8N NN--- 5'
|
— None on May 2010 — | |
TspEI | Thermus sp. 1E | 5' AATT 3' TTAA
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5' --- AATT--- 3' 3' ---TTAA --- 5'
|
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Tsp8EI | Thermus sp. 8E | 5' GCCN5GGC 3' CGGN5CCG
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5' ---GCCNNNN NGGC--- 3' 3' ---CGGN NNNNCCG--- 5'
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TspGWI | Thermus sp. GW | 5' ACGGA 3' TGCCT
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5' ---ACGGAN8NNN --- 3' 3' ---TGCCTN8N NN--- 5'
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TspMI = UthSI | Unidentified thermophile | 5' CCCGGG 3' GGGCCC
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5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
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AhyI, Cfr9I, EaeAI, EclRI, PaeBI, PspAI, SmaI, XcyI, XmaI, XmaCI | |
TspRI | Thermus sp. R | 5' CASTGNN 3' GTSAC
|
5' ---CASTGNN --- 3' 3' --- GTSACNN--- 5'
|
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Tth111I | Thermus thermophilus 111 | 5' GACNNNGTC 3' CTGNNNCAG
|
5' ---GACN NNGTC--- 3' 3' ---CTGNN NCAG--- 5'
|
AspI, AtsI, PflFI, PsyI, TelI | |
Tth111II | Thermus thermophilus 111 | 5' CAARCA 3' GTTYGT
|
5' ---CAARCAN8NNN --- 3' 3' ---GTTYGTN8N NN--- 5'
|
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TthHB8I | Thermus thermophilus HB8 | 5' TCGA 3' AGCT
|
5' ---T CGA--- 3' 3' ---AGC T--- 5'
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Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers |
Uba4009I | Unidentified bacterium A | 5' GGATCC 3' CCTAGG
|
5' ---G GATCC--- 3' 3' ---CCTAG G--- 5'
|
AccEBI, AliI, ApaCI, AsiI, BamHI, BnaI, BspAAIII, RspLKII, SolI | |
Uba153AI | Unidentified bacterium 153A | 5' CAGCTG 3' GTCGAC
|
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5'
|
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UbaM39I | Unidentified bacterium M39 | 5' CAGCTG 3' GTCGAC
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5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5'
|
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UnbI | Unidentified bacterium #8 | 5' GGNCC 3' CCNGG
|
5' --- GGNCC--- 3' 3' ---CCNGG --- 5'
|
AvcI, BavAII, Bce22I, Bsp1894I, Bsu54I, FmuI, NspIV, UnbI | |
Uur960I | Ureaplasma urealyticum 960 | 5' GCNGC 3' CGNCG
|
5' ---GC NGC--- 3' 3' ---CGN CG--- 5'
|
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Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers |
Van91I | Vibrio anguillarum RFL91 | 5' CCAN5TGG 3' GGTN5ACC
|
5' ---CCANNNN NTGG--- 3' 3' ---GGTN NNNNACC--- 5'
|
AccB7I, AcpII, Asp10HII, BasI, Esp1396I, PflBI, PflMI | |
Vha464I | Vibrio harveyi 464 | 5' CTTAAG 3' GAATTC
|
5' ---C TTAAG--- 3' 3' ---GAATT C--- 5'
|
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VneI | Vibrio nereis 18 | 5' GTGCAC 3' CACGTG
|
5' ---G TGCAC--- 3' 3' ---CACGT G--- 5'
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Alw44I, ApaLI, SnoI | |
VpaK32I | Vibrio parahaemolyticus 4387-61 | 5' GCTCTTC 3' CGAGAAG
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5' ---GCTCTTCN NNN--- 3' 3' ---CGAGAAGNNNN --- 5'
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VpaK11AI | Vibrio parahaemolyticus 1743 | 5' GGWCC 3' CCWGG
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5' --- GGWCC--- 3' 3' ---CCWGG --- 5'
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Bme216I, CauI, EagMI, FdiI, HgiBI, HgiHIII, SinI, VpaK11BI | |
VpaK11BI | Vibrio parahaemolyticus 1743-1 | 5' GGWCC 3' CCWGG
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5' ---G GWCC--- 3' 3' ---CCWG G--- 5'
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BsrAI, CauI, EagMI, FdiI, HgiBI, HgiJI, SinI, VpaK11AI | |
VspI | Vibrio sp. 343 | 5' ATTAAT 3' TAATTA
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5' ---AT TAAT--- 3' 3' ---TAAT TA--- 5'
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AseI, AsnI, BpoAI, PshBI, Sru4DI |
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Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers | |||
XagI | Xanthobacter agilis Vs 18-132 | 5' CCTN5AGG 3' GGAN5TCC
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5' ---CCTNN NNNAGG--- 3' 3' ---GGANNN NNTCC--- 5'
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XapI | Xanthomonas ampelina Slo 51-021 | 5' RAATTY 3' YTTAAR
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5' ---R AATTY--- 3' 3' ---YTTAA R--- 5'
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XbaI [7] | Xanthomonas badrii | 5' TCTAGA 3' AGATCT
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5' ---T CTAGA--- 3' 3' ---AGATC T--- 5'
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XcaI | Xanthomonas campestris | 5' GTATAC 3' CATATG
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5' ---GTA TAC--- 3' 3' ---CAT ATG--- 5'
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XceI | Xanthomonas campestris Ast 40-024 | 5' RCATGY 3' YGTACR
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5' ---RCATG Y--- 3' 3' ---Y GTACR--- 5'
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XciI | Xanthomonas citri | 5' GTCGAC 3' CAGCTG
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5' ---G TCGAC--- 3' 3' ---CAGCT G--- 5'
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XcmI | Xanthomonas campestris | 5' CCAN9TGG 3' GGTN9ACC
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5' ---CCANNNNN NNNNTGG--- 3' 3' ---GGTNNNN NNNNNACC--- 5'
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XcyI | Xanthomonas cyanopsidis 13D5 | 5' CCCGGG 3' GGGCCC
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5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
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CfrJ4I, EaeAI, EclRI, Pac25I, PspAI, TspMI, XmaI, XmaCI | ||||
XhoI | Xanthomonas holcicola | 5' CTCGAG 3' GAGCTC
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5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5'
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AbrI, BluI, BssHI, PanI, Sau3239I, Sfr274I, TliI, XpaI | ||||
XhoII | Xanthomonas holcicola | 5' RGATCY 3' YCTAGR
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5' ---R GATCY--- 3' 3' ---YCTAG R--- 5'
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XmaI | Xanthomonas malvacearum | 5' CCCGGG 3' GGGCCC
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5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
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AhyI, Cfr9I, EaeAI, EclRI, PaeBI, PspAI, TspMI, XcyI, XmaCI | ||||
XmaIII | Xanthomonas malvacearum | 5' CGGCCG 3' GCCGGC
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5' ---C GGCCG--- 3' 3' ---GCCGG C--- 5'
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AaaI, BseX3I, BstZI, EagI, EclXI, Eco52I, SenPT16I | ||||
XmaCI | Xanthomonas malvacearum C | 5' CCCGGG 3' GGGCCC
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5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
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AhyI, Cfr9I, EaeAI, EclRI, PaeBI, Pac25I, PspAI, TspMI, XcyI, XmaI | ||||
XmaJI | Xanthomonas maltophilia Jo 85-025 | 5' CCTAGG 3' GGATCC
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5' ---C CTAGG--- 3' 3' ---GGATC C--- 5'
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AspA2I, AvrII, AvrBII, BlnI, BspA2I | ||||
XmiI | Xanthomonas maltophilia Jo 21-021 | 5' GTMKAC 3' CAKMTG
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5' ---GT MKAC--- 3' 3' ---CAKM TG--- 5'
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AccI, FblI | ||||
XmnI | Xanthomonas manihotis 7AS1 | 5' GAAN4TTC 3' CTTN4AAG
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5' ---GAANN NNTTC--- 3' 3' ---CTTNN NNAAG--- 5'
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Asp700I, BbvAI, MroXI, PdmI | ||||
XorII | Xanthomonas oryzae | 5' CGATCG 3' GCTAGC
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5' ---CGAT CG--- 3' 3' ---GC TAGC--- 5'
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Afa16RI, BspCI, EagBI, ErhB9I, MvrI, Ple19I, PvuI, RshI | ||||
XpaI | Xanthomonas papavericola | 5' CTCGAG 3' GAGCTC
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5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5'
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BssHI, MavI, PanI, SauLPII, Sbi68I, Sol10179I, StrI, XhoI | ||||
XspI | Xanthomonas sp. YK1 | 5' CTAG 3' GATC
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5' ---C TAG--- 3' 3' ---GAT C--- 5'
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Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers |
YenI | Yersinia enterocolitica 08 A2635 | 5' CTGCAG 3' GACGTC
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5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
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Asp713I, BsuBI, CfrA4I, Ecl37kI, Psp23I, PstI, SalPI, SflI, Sst12I |
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Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers | ||||
ZanI | Zymomonas anaerobia | 5' CCWGG 3' GGWCC
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5' ---CC WGG--- 3' 3' ---GGW CC--- 5'
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ApaORI, BseBI, BspNI, BstNI, Bst2UI, CthII, EcoRII, MvaI, SspAI | |||||
ZhoI | Zymomonas holcicola | 5' ATCGAT 3' TAGCTA
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5' ---AT CGAT--- 3' 3' ---TAGC TA--- 5'
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BanIII, BbvAII, BscI, BspJI, ClaI, LcaI, PgaI, SpmI, Ssp27144I | |||||
ZraI | Zoogloea ramigera 11 | 5' GACGTC 3' CTGCAG
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5' ---GAC GTC--- 3' 3' ---CTG CAG--- 5'
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AatII, Ssp5230I | |||||
ZrmI | Zoogloea ramigera SCA | 5' AGTACT 3' TCATGA
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5' ---AGT ACT--- 3' 3' ---TCA TGA--- 5'
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Zsp2I | Zoogloea sp. 2 | 5' ATGCAT 3' TACGTA
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5' ---ATGCA T--- 3' 3' ---T ACGTA--- 5'
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BfrBI, Csp68KIII, EcoT22I, NsiI, PinBI, Ppu10I, SepI, SspD5II |
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