Legend of nucleobases | |
---|---|
Code | Nucleotide represented |
A | Adenine (A) |
C | Cytosine (C) |
G | Guanine (G) |
T | Thymine (T) |
N | A, C, G or T |
M | A or C |
R | A or G |
W | A or T |
Y | C or T |
S | C or G |
K | G or T |
H | A, C or T |
B | C, G or T |
V | A, C or G |
D | A, G or T |
This article contains a list of the most studied restriction enzymes whose names start with C to D inclusive. It contains approximately 80 enzymes.
The following information is given:
as in this not listed enzyme: | EcoR70I |
Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers | ||||||
CacI | Clostridium acetobutylicum N1-4081 | 5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
||||||||
Cac8I | Clostridium acetobutylicum ABKn8 | 5' GCNNGC 3' CGNNCG
|
5' ---GCN NGC--- 3' 3' ---CGN NCG--- 5'
|
||||||||
CaiI | Comamonas acidovarans Iti19-021 | 5' CAGNNNCTG 3' GTCNNNGAC
|
5' ---CAGNNN CTG--- 3' 3' ---GTC NNNGAC--- 5'
|
AlwNI | |||||||
CauI | Chloroflexus aurantiacus | 5' GGWCC 3' CCWGG
|
5' ---G GWCC--- 3' 3' ---CCWG G--- 5'
|
BamNxI, BcuAI, BsrAI, Eco47I, FspMSI, HgiCII, HgiJI, SmuEI | |||||||
CauII | Chloroflexus aurantiacus | 5' CCSGG 3' GGSCC
|
5' ---CC SGG--- 3' 3' ---GGS CC--- 5'
|
AhaI, AseII, AsuC2I, BcnI, Eco1831I, EcoHI, Kpn49kII, NciI | |||||||
CauB3I | Chloroflexus aurantiacus B3 | 5' TCCGGA 3' AGGCCT
|
5' ---T CCGGA--- 3' 3' ---AGGCC T--- 5'
|
Aor13HI, BbvAIII, BseAI, BspEI, BspMII, Kpn2I, MroI, PtaI | |||||||
CbiI | Clostridium bifermentans B-4 | 5' TTCGAA 3' AAGCTT
|
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5'
|
Asp10HI, Bim19I, BsiCI, BspT104I, Csp45I, LspI, NspV, SspRFI | |||||||
CboI | Clostridium botulinum | 5' CCGG 3' GGCC
|
5' ---C CGG--- 3' 3' ---GGC C--- 5'
|
||||||||
CbrI | Citrobacter braakii 1146 | 5' CCWGG 3' GGWCC
|
5' ---CC WGG--- 3' 3' ---GGW CC--- 5'
|
AorI, BseBI, Bse24I, BstNI, BstOI, Bst2UI, BthDI, EcoRII, MvaI | |||||||
CciNI | Curtobacterium citreus | 5' GCGGCCGC 3' CGCCGGCG
|
5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5'
|
||||||||
CcoI | Clostridium coccoides B-2 | 5' GCCGGC 3' CGGCCG
|
5' ---GCC GGC--- 3' 3' ---CGG CCG--- 5'
|
||||||||
CcrI | Caulobacter crescentus CB-13 | 5' CTCGAG 3' GAGCTC
|
5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5'
|
||||||||
CcuI | Chroococcidiopsis cubana | 5' GGNCC 3' CCNGG
|
5' ---G GNCC--- 3' 3' ---CCNG G--- 5'
|
AsuI, Bal228I, BavBII, BsiZI, BspF4I, Cfr13I, Nsp7121I, PspPI | |||||||
CcyI | Clostridium cylindrosporum | 5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
BfuCI, Bsp67I, Bst19II, CviAI, FnuCI, MboI, NmeCI, SauMI | |||||||
CdiI | Citrobacter freundii RFL2 | 5' CATCG 3' GTAGC
|
5' ---CATC G--- 3' 3' ---GTAG C--- 5'
|
||||||||
CelI | Citrobacter freundii RFL6 | 5' GGATCC 3' CCTAGG
|
5' ---G GATCC--- 3' 3' ---CCTAG G--- 5'
|
AliI, ApaCI, AsiI, BamHI, CelI, NspSAIV, RspLKII, SolI, Uba4009I | |||||||
CelII | Coccochloris elabens 17a | 5' GCTNAGC 3' CGANTCG
|
5' ---GC TNAGC--- 3' 3' ---CGANT CG--- 5'
|
||||||||
CeqI | Corynebacterium equi | 5' GATATC 3' CTATAG
|
5' ---GAT ATC--- 3' 3' ---CTA TAG--- 5'
|
||||||||
CflI | Cellulomonas flavigena | 5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, BloHII, CflI, CstI, Ecl37kI, PaePI, PstI, SalPI, Srl5DI, Sst12I | |||||||
CfoI | Clostridium formicoaceticum | 5' GCGC 3' CGCG
|
5' ---GCG C--- 3' 3' ---C GCG--- 5'
|
AspLEI, BspLAI, BstHHI, FnuDIII, HhaI, HinP1I, HsoI, HspAI, SciNI | |||||||
CfrI | Citrobacter freundii RFL2 | 5' YGGCCR 3' RCCGGY
|
5' ---Y GGCCR--- 3' 3' ---RCCGG Y--- 5'
|
||||||||
Cfr6I | Citrobacter freundii RFL6 | 5' CAGCTG 3' GTCGAC
|
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5'
|
||||||||
Cfr9I | Citrobacter freundii | 5' CCCGGG 3' GGGCCC
|
5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
|
AhyI, EaeAI, EclRI, Pac25I, PspAI, TspMI, XcyI, XmaI, XmaCI | |||||||
Cfr10I [7] [8] | 1CFR | Citrobacter freundii RFL10 | 5' RCCGGY 3' YGGCCR
|
5' ---R CCGGY--- 3' 3' ---YGGCC R--- 5'
|
|||||||
Cfr13I | Citrobacter freundii RFL13 | 5' GGNCC 3' CCNGG
|
5' ---G GNCC--- 3' 3' ---CCNG G--- 5'
|
AsuI, Bal228I, BavBII, BsiZI, BspF4I, FmuI, Nsp7121I, PspPI | |||||||
Cfr42I | Citrobacter freundii RFL42 | 5' CCGCGG 3' GGCGCC
|
5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5'
|
SacII, CscI, HgaI | |||||||
CfrA4I | Citrobacter freundii A4 | 5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, BloHII, CflI, CstI, Ecl2zI, PaePI, PstI, SalPI, Srl5DI, Sst12I | |||||||
CfrBI | Citrobacter freundii 4111 | 5' CCWWGG 3' GGWWCC
|
5' ---C CWWGG--- 3' 3' ---GGWWC C--- 5'
|
||||||||
CfrJ4I | Citrobacter freundii J4 | 5' CCCGGG 3' GGGCCC
|
5' ---CCC GGG--- 3' 3' ---GGG CCC--- 5'
|
AhyI, CfrJ4I, EaeAI, EclRI, Pac25I, SmaI, TspMI, XcyI, XmaI | |||||||
CfuI | Caulobacter fusiformis BC-25 | 5' GATC 3' CTAG
|
5' ---GA TC--- 3' 3' ---CT AG--- 5'
|
||||||||
CfuII | Caulobacter fusiformis BC-25 | 5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, AliAJI, CfuII, HalII, PaePI, Psp23I, PstI, SalPI, Srl5DI, YenI | |||||||
ChaI | Corynebacterium halofytica | 5' GATC 3' CTAG
|
5' ---GATC --- 3' 3' --- CTAG--- 5'
|
BfuCI, Bsp2095I, BspKT6I BtkII, FnuCI, MboI, NmeCI, SsiAI | |||||||
CjeI | Campylobacter jejuni P37 | 5' CCAN6GT 3' GGTN6CA
|
5' ---CCAN6GTN8NNNNNNN --- 3' 3' ---GGTN6CAN8N NNNNNN--- 5'
|
— None on May 2010 — | |||||||
CjePI | Campylobacter jejuni P116 | 5' CCAN7TC 3' GGTN7AG
|
5' ---CCAN7TCN7NNNNNNN --- 3' 3' ---GGTN7AGN7N NNNNNN--- 5'
|
— None on May 2010 — | |||||||
ClaI | Caryophanon latum L | 5' ATCGAT 3' TAGCTA
|
5' ---AT CGAT--- 3' 3' ---TAGC TA--- 5'
|
AagI, BanIII, BavCI, Bsa29I, BseCI, BspDI, Bsu15I, BsuTUI | |||||||
CltI | Caryophanon latum | 5' GGCC 3' CCGG
|
5' ---GG CC--- 3' 3' ---CC GG--- 5'
|
||||||||
CpfI | Clostridium perfringens | 5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
AspMDI, Bsp67I, Bst19II, CcyI, FnuCI, MboI, NphI, SauMI | |||||||
CpoI | Caseobacter polymorphus | 5' CGGWCCG 3' GCCWGGC
|
5' ---CG GWCCG--- 3' 3' ---GCCWG GC--- 5'
|
||||||||
CscI | Calothrix scopulorum | 5' CCGCGG 3' GGCGCC
|
5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5'
|
Cfr42I, SacII, HgaI | |||||||
CsiAI | Corynebacterium sp. A | 5' ACCGGT 3' TGGCCA
|
5' ---A CCGGT--- 3' 3' ---TGGCC A--- 5'
|
| |||||||
CsiBI | Corynebacterium sp. B | 5' GCGGCCGC 3' CGCCGGCG
|
5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5'
|
||||||||
CspI | Corynebacterium sp. | 5' CGGWCCG 3' GCCWGGC
|
5' ---CG GWCCG--- 3' 3' ---GCCWG GC--- 5'
|
||||||||
Csp6I | Corynebacterium sp. RFL6 | 5' GTAC 3' CATG
|
5' ---G TAC--- 3' 3' ---CAT G--- 5'
|
AfaI, CviQI, CviRII, HpyBI, PabI, PlaAII, RsaI, RsaNI, | |||||||
Csp45I | Clostridium sporogenes | 5' TTCGAA 3' AAGCTT
|
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5'
|
Asp10HI, Bim19I, BsiCI, BspT104I, FspII, LspI, NspV, SspRFI | |||||||
CspAI | Corynebacterium sp. 301 | 5' ACCGGT 3' TGGCCA
|
5' ---A CCGGT--- 3' 3' ---TGGCC A--- 5'
|
| |||||||
CspBI | Corynebacterium sp. B | 5' GCGGCCGC 3' CGCCGGCG
|
5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5'
|
||||||||
CspCI | Citrobacter sp. 2144 | 5' CAAN4NGTGG 3' GTTN4NCACC
|
5' ---CAAN5GTGGN8NNNN --- 3' 3' ---GTTN5CACCN8NN NN--- 5'
|
— None on May 2010 — | |||||||
Csp68KI | Cyanothece sp. BH68K | 5' GGWCC 3' CCWGG
|
5' ---G GWCC--- 3' 3' ---CCWG G--- 5'
|
BamNxI, BcuAI, BsrAI, Eco47I, FspMSI, HgiCII, Kzo49I, SmuEI | |||||||
Csp68KII | Cyanothece sp. BH68K | 5' TTCGAA 3' AAGCTT
|
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5'
|
Asp10HI, Bim19I, BsiCI, BstBI, Csp45I, LspI, PlaII, SviI | |||||||
Csp68KIII | Cyanothece sp. BH68K | 5' ATGCAT 3' TACGTA
|
5' ---ATGCA T--- 3' 3' ---T ACGTA--- 5'
|
BfrBI, EcoT22I, Mph1103I, NsiI, PinBI, Ppu10I, SspD5II, Zsp2I | |||||||
Csp68KVI | Cyanothece sp. BH68K | 5' CGCG 3' GCGC
|
5' ---CG CG--- 3' 3' ---GC GC--- 5'
|
BepI, Bpu95I, Bsp123I, BstFNI, BstUI, BtkI, FalII, SelI, ThaI | |||||||
CspKVI | Cyanothece sp. BH68K | 5' CGCG 3' GCGC
|
5' ---CG CG--- 3' 3' ---GC GC--- 5'
|
||||||||
CstI | Clostridium sticklandii | 5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, AliAJI, CfrA4I, HalII, MhaAI, Pfl21I, PstI, SflI, Srl5DI, YenI | |||||||
CstMI | Corynebacterium striatum M82B | 5' AAGGAG 3' TTCCTC
|
5' ---AAGGAGN17NNN --- 3' 3' ---TTCCTCN17N NN--- 5'
|
— None on May 2010 — | |||||||
CthII | Clostridium thermocellum | 5' CCWGG 3' GGWCC
|
5' ---CC WGG--- 3' 3' ---GGW CC--- 5'
|
ApaORI, BseBI, Bse24I, Bst2UI, BstNI, BstM6I, EcoRII, MvaI | |||||||
CviAI | Chlorella NC64A (PBCV-1) | 5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
Bme12I, Bsp67I, Bst19II, CcyI, FnuCI, MgoI, NphI, SauMI | |||||||
CviAII | Chlorella NC64A (PBCV-1) | 5' CATG 3' GTAC
|
5' ---C ATG--- 3' 3' ---GTA C--- 5'
|
||||||||
CviBI | Chlorella NC64A (NC-1A) | 5' GANTC 3' CTNAG
|
5' ---G ANTC--- 3' 3' ---CTNA G--- 5'
|
||||||||
CviJI | Chlorella NC64A (IL-3A) | 5' RGCY 3' YCGR
|
5' ---RG CY--- 3' 3' ---YC GR--- 5'
|
||||||||
CviQI | Chlorella NC64A (NY-2A) | 5' GTAC 3' CATG
|
5' ---G TAC--- 3' 3' ---CAT G--- 5'
|
AfaI, Csp6I, CviRII, HpyBI, PabI, PlaAII, RsaI, RsaNI, | |||||||
CviRI | Chlorella NC64A (XZ-6E) | 5' TGCA 3' ACGT
|
5' ---TG CA--- 3' 3' ---AC GT--- 5'
|
||||||||
CviRII | Chlorella NC64A (XZ-6E) | 5' GTAC 3' CATG
|
5' ---G TAC--- 3' 3' ---CAT G--- 5'
|
AfaI, Csp6I, CviQI, HpyBI, PabI, PlaAII, RsaI, RsaNI, | |||||||
CviTI | Chlorella NC64A (CA-1A) | 5' RGCY 3' YCGR
|
5' ---RG CY--- 3' 3' ---YC GR--- 5'
|
||||||||
CvnI | Chromatium vinosum | 5' CCTNAGG 3' GGANTCC
|
5' ---CC TNAGG--- 3' 3' ---GGANT CC--- 5'
|
AocI, AxyI, Bse21I, Bsu36I, Eco81I, MstII, SauI, SshAI |
Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers | ||||||
DdeI | Desulfovibrio desulfuricans | 5' CTNAG 3' GANTC
|
5' ---C TNAG--- 3' 3' ---GANT C--- 5'
|
| |||||||
DmaI | Deleya marina | 5' CAGCTG 3' GTCGAC
|
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5'
|
||||||||
DpaI | Deleya pacifica | 5' AGTACT 3' TCATGA
|
5' ---AGT ACT--- 3' 3' ---TCA TGA--- 5'
|
| |||||||
DpnI | Diplococcus pneumoniae G41 | 5' GATC 3' CTAG
|
5' ---GA TC--- 3' 3' ---CT AG--- 5'
|
||||||||
DpnII | Diplococcus pneumoniae G41 | 5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
AspMDI, Bsp105I, BspFI, BstMBI, CpfI, Kzo9I, NdeII, Sth368I | |||||||
DraI | Deinococcus radiophilus | 5' TTTAAA 3' AAATTT
|
5' ---TTT AAA--- 3' 3' ---AAA TTT--- 5'
|
AhaIII, PauAII, SruI | |||||||
DraII | Deinococcus radiophilus | 5' RGGNCCY 3' YCCNGGR
|
5' ---RG GNCCY--- 3' 3' ---YCCNG GR--- 5'
|
||||||||
DraIII | Deinococcus radiophilus | 5' CACNNNGTG 3' GTGNNNCAC
|
5' ---CACNNN GTG--- 3' 3' ---GTG NNNCAC--- 5'
|
AdeI, BstIZ316I | |||||||
DrdI | Deinococcus radiodurans | 5' GACN6GTC 3' CTGN6CAG
|
5' ---GACNNNN NNGTC--- 3' 3' ---CTGNN NNNNCAG--- 5'
|
AasI, DseDI | |||||||
DriI | Dactylococcopsis salina | 5' GACN5GTC 3' CTGN5CAG
|
5' ---GACNNN NNGTC--- 3' 3' ---CTGNN NNNCAG--- 5'
|
| |||||||
DsaI | Dactylococcopsis salina | 5' CCRYGG 3' GGYRCC
|
5' ---C CRYGG--- 3' 3' ---GGYRC C--- 5'
|
||||||||
DsaII | Dactylococcopsis salina | 5' GGCC 3' CCGG
|
5' ---GG CC--- 3' 3' ---CC GG--- 5'
|
||||||||
DsaIII | Dactylococcopsis salina | 5' RGATCY 3' YCTAGR
|
5' ---R GATCY--- 3' 3' ---YCTAG R--- 5'
|
||||||||
DsaIV | Dactylococcopsis salina | 5' GGWCC 3' CCWGG
|
5' ---G GWCC--- 3' 3' ---CCWG G--- 5'
|
BamNxI, BcuAI, BsrAI, Eco47I, FspMSI, HgiEI, Kzo49I, SmuEI | |||||||
DsaV | Dactylococcopsis salina | 5' CCNGG 3' GGNCC
|
5' --- CCNGG--- 3' 3' ---GGNCC --- 5'
|
||||||||
DseDI | Deinococcus sp. Dx | 5' GACN6GTC 3' CTGN6CAG
|
5' ---GACNNNN NNGTC--- 3' 3' ---CTGNN NNNNCAG--- 5'
|
AasI, DrdI |
Legend of nucleobases | |
---|---|
Code | Nucleotide represented |
A | Adenine (A) |
C | Cytosine (C) |
G | Guanine (G) |
T | Thymine (T) |
N | A, C, G or T |
M | A or C |
R | A or G |
W | A or T |
Y | C or T |
S | C or G |
K | G or T |
H | A, C or T |
B | C, G or T |
V | A, C or G |
D | A, G or T |
This article contains a list of the most studied restriction enzymes whose names start with C to D inclusive. It contains approximately 80 enzymes.
The following information is given:
as in this not listed enzyme: | EcoR70I |
Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers | ||||||
CacI | Clostridium acetobutylicum N1-4081 | 5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
||||||||
Cac8I | Clostridium acetobutylicum ABKn8 | 5' GCNNGC 3' CGNNCG
|
5' ---GCN NGC--- 3' 3' ---CGN NCG--- 5'
|
||||||||
CaiI | Comamonas acidovarans Iti19-021 | 5' CAGNNNCTG 3' GTCNNNGAC
|
5' ---CAGNNN CTG--- 3' 3' ---GTC NNNGAC--- 5'
|
AlwNI | |||||||
CauI | Chloroflexus aurantiacus | 5' GGWCC 3' CCWGG
|
5' ---G GWCC--- 3' 3' ---CCWG G--- 5'
|
BamNxI, BcuAI, BsrAI, Eco47I, FspMSI, HgiCII, HgiJI, SmuEI | |||||||
CauII | Chloroflexus aurantiacus | 5' CCSGG 3' GGSCC
|
5' ---CC SGG--- 3' 3' ---GGS CC--- 5'
|
AhaI, AseII, AsuC2I, BcnI, Eco1831I, EcoHI, Kpn49kII, NciI | |||||||
CauB3I | Chloroflexus aurantiacus B3 | 5' TCCGGA 3' AGGCCT
|
5' ---T CCGGA--- 3' 3' ---AGGCC T--- 5'
|
Aor13HI, BbvAIII, BseAI, BspEI, BspMII, Kpn2I, MroI, PtaI | |||||||
CbiI | Clostridium bifermentans B-4 | 5' TTCGAA 3' AAGCTT
|
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5'
|
Asp10HI, Bim19I, BsiCI, BspT104I, Csp45I, LspI, NspV, SspRFI | |||||||
CboI | Clostridium botulinum | 5' CCGG 3' GGCC
|
5' ---C CGG--- 3' 3' ---GGC C--- 5'
|
||||||||
CbrI | Citrobacter braakii 1146 | 5' CCWGG 3' GGWCC
|
5' ---CC WGG--- 3' 3' ---GGW CC--- 5'
|
AorI, BseBI, Bse24I, BstNI, BstOI, Bst2UI, BthDI, EcoRII, MvaI | |||||||
CciNI | Curtobacterium citreus | 5' GCGGCCGC 3' CGCCGGCG
|
5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5'
|
||||||||
CcoI | Clostridium coccoides B-2 | 5' GCCGGC 3' CGGCCG
|
5' ---GCC GGC--- 3' 3' ---CGG CCG--- 5'
|
||||||||
CcrI | Caulobacter crescentus CB-13 | 5' CTCGAG 3' GAGCTC
|
5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5'
|
||||||||
CcuI | Chroococcidiopsis cubana | 5' GGNCC 3' CCNGG
|
5' ---G GNCC--- 3' 3' ---CCNG G--- 5'
|
AsuI, Bal228I, BavBII, BsiZI, BspF4I, Cfr13I, Nsp7121I, PspPI | |||||||
CcyI | Clostridium cylindrosporum | 5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
BfuCI, Bsp67I, Bst19II, CviAI, FnuCI, MboI, NmeCI, SauMI | |||||||
CdiI | Citrobacter freundii RFL2 | 5' CATCG 3' GTAGC
|
5' ---CATC G--- 3' 3' ---GTAG C--- 5'
|
||||||||
CelI | Citrobacter freundii RFL6 | 5' GGATCC 3' CCTAGG
|
5' ---G GATCC--- 3' 3' ---CCTAG G--- 5'
|
AliI, ApaCI, AsiI, BamHI, CelI, NspSAIV, RspLKII, SolI, Uba4009I | |||||||
CelII | Coccochloris elabens 17a | 5' GCTNAGC 3' CGANTCG
|
5' ---GC TNAGC--- 3' 3' ---CGANT CG--- 5'
|
||||||||
CeqI | Corynebacterium equi | 5' GATATC 3' CTATAG
|
5' ---GAT ATC--- 3' 3' ---CTA TAG--- 5'
|
||||||||
CflI | Cellulomonas flavigena | 5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, BloHII, CflI, CstI, Ecl37kI, PaePI, PstI, SalPI, Srl5DI, Sst12I | |||||||
CfoI | Clostridium formicoaceticum | 5' GCGC 3' CGCG
|
5' ---GCG C--- 3' 3' ---C GCG--- 5'
|
AspLEI, BspLAI, BstHHI, FnuDIII, HhaI, HinP1I, HsoI, HspAI, SciNI | |||||||
CfrI | Citrobacter freundii RFL2 | 5' YGGCCR 3' RCCGGY
|
5' ---Y GGCCR--- 3' 3' ---RCCGG Y--- 5'
|
||||||||
Cfr6I | Citrobacter freundii RFL6 | 5' CAGCTG 3' GTCGAC
|
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5'
|
||||||||
Cfr9I | Citrobacter freundii | 5' CCCGGG 3' GGGCCC
|
5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
|
AhyI, EaeAI, EclRI, Pac25I, PspAI, TspMI, XcyI, XmaI, XmaCI | |||||||
Cfr10I [7] [8] | 1CFR | Citrobacter freundii RFL10 | 5' RCCGGY 3' YGGCCR
|
5' ---R CCGGY--- 3' 3' ---YGGCC R--- 5'
|
|||||||
Cfr13I | Citrobacter freundii RFL13 | 5' GGNCC 3' CCNGG
|
5' ---G GNCC--- 3' 3' ---CCNG G--- 5'
|
AsuI, Bal228I, BavBII, BsiZI, BspF4I, FmuI, Nsp7121I, PspPI | |||||||
Cfr42I | Citrobacter freundii RFL42 | 5' CCGCGG 3' GGCGCC
|
5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5'
|
SacII, CscI, HgaI | |||||||
CfrA4I | Citrobacter freundii A4 | 5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, BloHII, CflI, CstI, Ecl2zI, PaePI, PstI, SalPI, Srl5DI, Sst12I | |||||||
CfrBI | Citrobacter freundii 4111 | 5' CCWWGG 3' GGWWCC
|
5' ---C CWWGG--- 3' 3' ---GGWWC C--- 5'
|
||||||||
CfrJ4I | Citrobacter freundii J4 | 5' CCCGGG 3' GGGCCC
|
5' ---CCC GGG--- 3' 3' ---GGG CCC--- 5'
|
AhyI, CfrJ4I, EaeAI, EclRI, Pac25I, SmaI, TspMI, XcyI, XmaI | |||||||
CfuI | Caulobacter fusiformis BC-25 | 5' GATC 3' CTAG
|
5' ---GA TC--- 3' 3' ---CT AG--- 5'
|
||||||||
CfuII | Caulobacter fusiformis BC-25 | 5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, AliAJI, CfuII, HalII, PaePI, Psp23I, PstI, SalPI, Srl5DI, YenI | |||||||
ChaI | Corynebacterium halofytica | 5' GATC 3' CTAG
|
5' ---GATC --- 3' 3' --- CTAG--- 5'
|
BfuCI, Bsp2095I, BspKT6I BtkII, FnuCI, MboI, NmeCI, SsiAI | |||||||
CjeI | Campylobacter jejuni P37 | 5' CCAN6GT 3' GGTN6CA
|
5' ---CCAN6GTN8NNNNNNN --- 3' 3' ---GGTN6CAN8N NNNNNN--- 5'
|
— None on May 2010 — | |||||||
CjePI | Campylobacter jejuni P116 | 5' CCAN7TC 3' GGTN7AG
|
5' ---CCAN7TCN7NNNNNNN --- 3' 3' ---GGTN7AGN7N NNNNNN--- 5'
|
— None on May 2010 — | |||||||
ClaI | Caryophanon latum L | 5' ATCGAT 3' TAGCTA
|
5' ---AT CGAT--- 3' 3' ---TAGC TA--- 5'
|
AagI, BanIII, BavCI, Bsa29I, BseCI, BspDI, Bsu15I, BsuTUI | |||||||
CltI | Caryophanon latum | 5' GGCC 3' CCGG
|
5' ---GG CC--- 3' 3' ---CC GG--- 5'
|
||||||||
CpfI | Clostridium perfringens | 5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
AspMDI, Bsp67I, Bst19II, CcyI, FnuCI, MboI, NphI, SauMI | |||||||
CpoI | Caseobacter polymorphus | 5' CGGWCCG 3' GCCWGGC
|
5' ---CG GWCCG--- 3' 3' ---GCCWG GC--- 5'
|
||||||||
CscI | Calothrix scopulorum | 5' CCGCGG 3' GGCGCC
|
5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5'
|
Cfr42I, SacII, HgaI | |||||||
CsiAI | Corynebacterium sp. A | 5' ACCGGT 3' TGGCCA
|
5' ---A CCGGT--- 3' 3' ---TGGCC A--- 5'
|
| |||||||
CsiBI | Corynebacterium sp. B | 5' GCGGCCGC 3' CGCCGGCG
|
5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5'
|
||||||||
CspI | Corynebacterium sp. | 5' CGGWCCG 3' GCCWGGC
|
5' ---CG GWCCG--- 3' 3' ---GCCWG GC--- 5'
|
||||||||
Csp6I | Corynebacterium sp. RFL6 | 5' GTAC 3' CATG
|
5' ---G TAC--- 3' 3' ---CAT G--- 5'
|
AfaI, CviQI, CviRII, HpyBI, PabI, PlaAII, RsaI, RsaNI, | |||||||
Csp45I | Clostridium sporogenes | 5' TTCGAA 3' AAGCTT
|
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5'
|
Asp10HI, Bim19I, BsiCI, BspT104I, FspII, LspI, NspV, SspRFI | |||||||
CspAI | Corynebacterium sp. 301 | 5' ACCGGT 3' TGGCCA
|
5' ---A CCGGT--- 3' 3' ---TGGCC A--- 5'
|
| |||||||
CspBI | Corynebacterium sp. B | 5' GCGGCCGC 3' CGCCGGCG
|
5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5'
|
||||||||
CspCI | Citrobacter sp. 2144 | 5' CAAN4NGTGG 3' GTTN4NCACC
|
5' ---CAAN5GTGGN8NNNN --- 3' 3' ---GTTN5CACCN8NN NN--- 5'
|
— None on May 2010 — | |||||||
Csp68KI | Cyanothece sp. BH68K | 5' GGWCC 3' CCWGG
|
5' ---G GWCC--- 3' 3' ---CCWG G--- 5'
|
BamNxI, BcuAI, BsrAI, Eco47I, FspMSI, HgiCII, Kzo49I, SmuEI | |||||||
Csp68KII | Cyanothece sp. BH68K | 5' TTCGAA 3' AAGCTT
|
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5'
|
Asp10HI, Bim19I, BsiCI, BstBI, Csp45I, LspI, PlaII, SviI | |||||||
Csp68KIII | Cyanothece sp. BH68K | 5' ATGCAT 3' TACGTA
|
5' ---ATGCA T--- 3' 3' ---T ACGTA--- 5'
|
BfrBI, EcoT22I, Mph1103I, NsiI, PinBI, Ppu10I, SspD5II, Zsp2I | |||||||
Csp68KVI | Cyanothece sp. BH68K | 5' CGCG 3' GCGC
|
5' ---CG CG--- 3' 3' ---GC GC--- 5'
|
BepI, Bpu95I, Bsp123I, BstFNI, BstUI, BtkI, FalII, SelI, ThaI | |||||||
CspKVI | Cyanothece sp. BH68K | 5' CGCG 3' GCGC
|
5' ---CG CG--- 3' 3' ---GC GC--- 5'
|
||||||||
CstI | Clostridium sticklandii | 5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, AliAJI, CfrA4I, HalII, MhaAI, Pfl21I, PstI, SflI, Srl5DI, YenI | |||||||
CstMI | Corynebacterium striatum M82B | 5' AAGGAG 3' TTCCTC
|
5' ---AAGGAGN17NNN --- 3' 3' ---TTCCTCN17N NN--- 5'
|
— None on May 2010 — | |||||||
CthII | Clostridium thermocellum | 5' CCWGG 3' GGWCC
|
5' ---CC WGG--- 3' 3' ---GGW CC--- 5'
|
ApaORI, BseBI, Bse24I, Bst2UI, BstNI, BstM6I, EcoRII, MvaI | |||||||
CviAI | Chlorella NC64A (PBCV-1) | 5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
Bme12I, Bsp67I, Bst19II, CcyI, FnuCI, MgoI, NphI, SauMI | |||||||
CviAII | Chlorella NC64A (PBCV-1) | 5' CATG 3' GTAC
|
5' ---C ATG--- 3' 3' ---GTA C--- 5'
|
||||||||
CviBI | Chlorella NC64A (NC-1A) | 5' GANTC 3' CTNAG
|
5' ---G ANTC--- 3' 3' ---CTNA G--- 5'
|
||||||||
CviJI | Chlorella NC64A (IL-3A) | 5' RGCY 3' YCGR
|
5' ---RG CY--- 3' 3' ---YC GR--- 5'
|
||||||||
CviQI | Chlorella NC64A (NY-2A) | 5' GTAC 3' CATG
|
5' ---G TAC--- 3' 3' ---CAT G--- 5'
|
AfaI, Csp6I, CviRII, HpyBI, PabI, PlaAII, RsaI, RsaNI, | |||||||
CviRI | Chlorella NC64A (XZ-6E) | 5' TGCA 3' ACGT
|
5' ---TG CA--- 3' 3' ---AC GT--- 5'
|
||||||||
CviRII | Chlorella NC64A (XZ-6E) | 5' GTAC 3' CATG
|
5' ---G TAC--- 3' 3' ---CAT G--- 5'
|
AfaI, Csp6I, CviQI, HpyBI, PabI, PlaAII, RsaI, RsaNI, | |||||||
CviTI | Chlorella NC64A (CA-1A) | 5' RGCY 3' YCGR
|
5' ---RG CY--- 3' 3' ---YC GR--- 5'
|
||||||||
CvnI | Chromatium vinosum | 5' CCTNAGG 3' GGANTCC
|
5' ---CC TNAGG--- 3' 3' ---GGANT CC--- 5'
|
AocI, AxyI, Bse21I, Bsu36I, Eco81I, MstII, SauI, SshAI |
Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers | ||||||
DdeI | Desulfovibrio desulfuricans | 5' CTNAG 3' GANTC
|
5' ---C TNAG--- 3' 3' ---GANT C--- 5'
|
| |||||||
DmaI | Deleya marina | 5' CAGCTG 3' GTCGAC
|
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5'
|
||||||||
DpaI | Deleya pacifica | 5' AGTACT 3' TCATGA
|
5' ---AGT ACT--- 3' 3' ---TCA TGA--- 5'
|
| |||||||
DpnI | Diplococcus pneumoniae G41 | 5' GATC 3' CTAG
|
5' ---GA TC--- 3' 3' ---CT AG--- 5'
|
||||||||
DpnII | Diplococcus pneumoniae G41 | 5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
AspMDI, Bsp105I, BspFI, BstMBI, CpfI, Kzo9I, NdeII, Sth368I | |||||||
DraI | Deinococcus radiophilus | 5' TTTAAA 3' AAATTT
|
5' ---TTT AAA--- 3' 3' ---AAA TTT--- 5'
|
AhaIII, PauAII, SruI | |||||||
DraII | Deinococcus radiophilus | 5' RGGNCCY 3' YCCNGGR
|
5' ---RG GNCCY--- 3' 3' ---YCCNG GR--- 5'
|
||||||||
DraIII | Deinococcus radiophilus | 5' CACNNNGTG 3' GTGNNNCAC
|
5' ---CACNNN GTG--- 3' 3' ---GTG NNNCAC--- 5'
|
AdeI, BstIZ316I | |||||||
DrdI | Deinococcus radiodurans | 5' GACN6GTC 3' CTGN6CAG
|
5' ---GACNNNN NNGTC--- 3' 3' ---CTGNN NNNNCAG--- 5'
|
AasI, DseDI | |||||||
DriI | Dactylococcopsis salina | 5' GACN5GTC 3' CTGN5CAG
|
5' ---GACNNN NNGTC--- 3' 3' ---CTGNN NNNCAG--- 5'
|
| |||||||
DsaI | Dactylococcopsis salina | 5' CCRYGG 3' GGYRCC
|
5' ---C CRYGG--- 3' 3' ---GGYRC C--- 5'
|
||||||||
DsaII | Dactylococcopsis salina | 5' GGCC 3' CCGG
|
5' ---GG CC--- 3' 3' ---CC GG--- 5'
|
||||||||
DsaIII | Dactylococcopsis salina | 5' RGATCY 3' YCTAGR
|
5' ---R GATCY--- 3' 3' ---YCTAG R--- 5'
|
||||||||
DsaIV | Dactylococcopsis salina | 5' GGWCC 3' CCWGG
|
5' ---G GWCC--- 3' 3' ---CCWG G--- 5'
|
BamNxI, BcuAI, BsrAI, Eco47I, FspMSI, HgiEI, Kzo49I, SmuEI | |||||||
DsaV | Dactylococcopsis salina | 5' CCNGG 3' GGNCC
|
5' --- CCNGG--- 3' 3' ---GGNCC --- 5'
|
||||||||
DseDI | Deinococcus sp. Dx | 5' GACN6GTC 3' CTGN6CAG
|
5' ---GACNNNN NNGTC--- 3' 3' ---CTGNN NNNNCAG--- 5'
|
AasI, DrdI |