 | This article may rely excessively on sources
too closely associated with the subject, potentially preventing the article from being
verifiable and
neutral. (January 2024) |
The Global Biodata Coalition is an organization promoting biocuration and fostering support of research funders for the sustainability of biological data resources. [1] [2] [3]
Global Core Biodata Resources (GCBRs)
The organization maintains a list of resources, representing "critical components for ensuring the reproducibility and integrity of life sciences research." [4]
As of 2023, the list includes the following organizations: [5]
- Alliance of Genome Resources
- BacDive
- BAR: Bio-Analytic Resource for Plant Biology
- Bgee
- BRENDA
- Catalogue of Life (COL)
- CATH database
- Cellosaurus
- ChEBI
- ChEMBL
- CIViC: Clinical Interpretation of Variants in Cancer
- Clinical Genome Resource (ClinGen)
- DNA Data Bank of Japan (DDBJ Center)
- EcoCyc
- Ensembl
- Europe PMC
- European Nucleotide Archive (ENA)
- FlyBase
- GENCODE
- Gene Ontology (GO)
- Global Biodiversity Information Facility (GBIF)
- Genome Aggregation Database (gnomAD)
- Genome Sequence Archive (GSA)
- NHGRI-EBI Catalog of human genome-wide association studies ( GWAS Catalog)
- Gene Expression Database (GXD)
- HGNC: HUGO Gene Nomenclature Committee
- Human Disease Ontology Knowledgebase (DO-KB)
- Human Protein Atlas
- IMEx: International Molecular Exchange Consortium
- InterPro
- IUPHAR/BPS Guide to PHARMACOLOGY
- LIPID MAPS
- LPSN: List of Prokaryotic names with Standing in Nomenclature
- MGD: Mouse Genome Database
- Orphadata Science
- PANTHER
- PharmGKB: Pharmacogenomics Knowledgebase
- Planteome (including the Plant Ontology)
- PomBase
- Protein Data Bank (PDB)
- ProteomeXchange Consortium
- Rat Genome Database (RGD)
- Reactome
- Rhea
- Saccharomyces Genome Database (SGD)
- SILVA
- STRING
- UCSC Genome Browser
- UniProt
- VEuPathDB
- WormBase
- ZFIN: The Zebrafish Information Network
References
- ^ Cook, Chuck; Cochrane, Guy (2023-09-08). "The Global Biodata Coalition: Towards a sustainable biodata infrastructure". Biodiversity Information Science and Standards. 7. doi: 10.3897/biss.7.112303. ISSN 2535-0897.
- ^ "Global Biodata Coalition: White Paper on Open Data Strategies". RDA. 2023-11-27. Retrieved 2023-12-11.
- ^ "Global Biodata Coalition coordinates worldwide funding of data resources". Genome.gov. Retrieved 2023-12-11.
- ^ "GBIF named a Global Core Biodata Resource". www.gbif.org. Retrieved 2023-12-11.
- ^ "List of Current Global Core Biodata Resources". Global Biodata Coalition. Retrieved 2023-12-11.
External links
| This article may rely excessively on sources
too closely associated with the subject, potentially preventing the article from being
verifiable and
neutral. (January 2024) |
The Global Biodata Coalition is an organization promoting biocuration and fostering support of research funders for the sustainability of biological data resources. [1] [2] [3]
Global Core Biodata Resources (GCBRs)
The organization maintains a list of resources, representing "critical components for ensuring the reproducibility and integrity of life sciences research." [4]
As of 2023, the list includes the following organizations: [5]
- Alliance of Genome Resources
- BacDive
- BAR: Bio-Analytic Resource for Plant Biology
- Bgee
- BRENDA
- Catalogue of Life (COL)
- CATH database
- Cellosaurus
- ChEBI
- ChEMBL
- CIViC: Clinical Interpretation of Variants in Cancer
- Clinical Genome Resource (ClinGen)
- DNA Data Bank of Japan (DDBJ Center)
- EcoCyc
- Ensembl
- Europe PMC
- European Nucleotide Archive (ENA)
- FlyBase
- GENCODE
- Gene Ontology (GO)
- Global Biodiversity Information Facility (GBIF)
- Genome Aggregation Database (gnomAD)
- Genome Sequence Archive (GSA)
- NHGRI-EBI Catalog of human genome-wide association studies ( GWAS Catalog)
- Gene Expression Database (GXD)
- HGNC: HUGO Gene Nomenclature Committee
- Human Disease Ontology Knowledgebase (DO-KB)
- Human Protein Atlas
- IMEx: International Molecular Exchange Consortium
- InterPro
- IUPHAR/BPS Guide to PHARMACOLOGY
- LIPID MAPS
- LPSN: List of Prokaryotic names with Standing in Nomenclature
- MGD: Mouse Genome Database
- Orphadata Science
- PANTHER
- PharmGKB: Pharmacogenomics Knowledgebase
- Planteome (including the Plant Ontology)
- PomBase
- Protein Data Bank (PDB)
- ProteomeXchange Consortium
- Rat Genome Database (RGD)
- Reactome
- Rhea
- Saccharomyces Genome Database (SGD)
- SILVA
- STRING
- UCSC Genome Browser
- UniProt
- VEuPathDB
- WormBase
- ZFIN: The Zebrafish Information Network
References
- ^ Cook, Chuck; Cochrane, Guy (2023-09-08). "The Global Biodata Coalition: Towards a sustainable biodata infrastructure". Biodiversity Information Science and Standards. 7. doi: 10.3897/biss.7.112303. ISSN 2535-0897.
- ^ "Global Biodata Coalition: White Paper on Open Data Strategies". RDA. 2023-11-27. Retrieved 2023-12-11.
- ^ "Global Biodata Coalition coordinates worldwide funding of data resources". Genome.gov. Retrieved 2023-12-11.
- ^ "GBIF named a Global Core Biodata Resource". www.gbif.org. Retrieved 2023-12-11.
- ^ "List of Current Global Core Biodata Resources". Global Biodata Coalition. Retrieved 2023-12-11.