From Wikipedia, the free encyclopedia
Gene Expression Omnibus (GEO) is a
database for
gene expression profiling and
RNA methylation profiling managed by the
National Center for Biotechnology Information (NCBI).
[1] These
high-throughput screening genomics data are derived from
microarray or
RNA-Seq experimental data.
[2] These data need to conform to the
minimum information about a microarray experiment (MIAME) format.
[3]
Glossary
Abbreviation
|
Description
|
GDS
|
DataSet accession
|
GPL
|
Platform accession
|
GSE
|
Series accession
|
GSM
|
Sample accession
|
References
- ^
a
b Edgar, R; Domrachev, M; Lash, AE (1 January 2002).
"Gene Expression Omnibus: NCBI gene expression and hybridization array data repository". Nucleic Acids Research. 30 (1): 207–10.
doi:
10.1093/nar/30.1.207.
PMC
99122.
PMID
11752295.
-
^ Barrett, T; Wilhite, SE; Ledoux, P; Evangelista, C; Kim, IF; Tomashevsky, M; Marshall, KA; Phillippy, KH; Sherman, PM; Holko, M; Yefanov, A; Lee, H; Zhang, N; Robertson, CL; Serova, N; Davis, S; Soboleva, A (January 2013).
"NCBI GEO: archive for functional genomics data sets--update". Nucleic Acids Research. 41 (Database issue): D991-5.
doi:
10.1093/nar/gks1193.
PMC
3531084.
PMID
23193258.
-
^ Brazma, A; Hingamp, P; Quackenbush, J; Sherlock, G; Spellman, P; Stoeckert, C; Aach, J; Ansorge, W; Ball, CA; Causton, HC; Gaasterland, T; Glenisson, P; Holstege, FC; Kim, IF; Markowitz, V; Matese, JC; Parkinson, H; Robinson, A; Sarkans, U; Schulze-Kremer, S; Stewart, J; Taylor, R; Vilo, J; Vingron, M (December 2001).
"Minimum information about a microarray experiment (MIAME)-toward standards for microarray data". Nature Genetics. 29 (4): 365–71.
doi:
10.1038/ng1201-365.
PMID
11726920.
S2CID
6994467.
|
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Databases |
GenBank,
PubMed,
PubMed Central,
Conserved Domain Database,
dbSNP,
Histone Database,
Online Mendelian Inheritance in Man,
Molecular Modeling Database,
GenBank,
NCBI Epigenomics,
Entrez,
RefSeq,
Univec,
Gene Expression Omnibus | |
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people | |
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