Euryarchaeota | |
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Halobacterium sp. strain NRC-1, each cell about 5 µm in length. | |
Scientific classification | |
Domain: | Archaea |
Kingdom: |
Euryarchaeota Woese, Kandler & Wheelis, 1990 [1] |
Phyla [2] | |
Synonyms | |
|
Euryarchaeota (from Ancient Greek εὐρύς eurús, "broad, wide") is a kingdom of archaea. [3] Euryarchaeota are highly diverse and include methanogens, which produce methane and are often found in intestines; halobacteria, which survive extreme concentrations of salt; and some extremely thermophilic aerobes and anaerobes, which generally live at temperatures between 41 and 122 °C. They are separated from the other archaeans based mainly on rRNA sequences and their unique DNA polymerase. [4]
The Euryarchaeota are diverse in appearance and metabolic properties. The phylum contains organisms of a variety of shapes, including both rods and cocci. Euryarchaeota may appear either gram-positive or gram-negative depending on whether pseudomurein is present in the cell wall. [5] Euryarchaeota also demonstrate diverse lifestyles, including methanogens, halophiles, sulfate-reducers, and extreme thermophiles in each. [5] Others live in the ocean, suspended with plankton and bacteria. Although these marine euryarchaeota are difficult to culture and study in a lab, genomic sequencing suggests that they are motile heterotrophs. [6]
Though it was previously thought that euryarchaeota only lived in extreme environments (in terms of temperature, salt content and/or pH), a paper by Korzhenkov et al published in January 2019 showed that euryarchaeota also live in moderate environments, such as low-temperature acidic environments. In some cases, euryarchaeota outnumbered the bacteria present. [7] Euryarchaeota have also been found in other moderate environments such as water springs, marshlands, soil and rhizospheres. [8] Some euryarchaeota are highly adaptable; an order called Halobacteriales are usually found in extremely salty and sulfur-rich environments but can also grow in salt concentrations as low as that of seawater 2.5%. [8] In rhizospheres, the presence of euryarchaeota seems to be dependent on that of mycorrhizal fungi; a higher fungal population was correlated with higher euryarchaeotal frequency and diversity, while absence of mycorrihizal fungi was correlated with absence of euryarchaeota. [8]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [9] and National Center for Biotechnology Information (NCBI) [10]
16S rRNA based LTP_12_2021. [11] [12] [13] | Dombrowski et al. 2019, [14] Jordan et al. 2017 [15] and Cavalier-Smith2020. [16] | |||||||||
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Other phylogenetic analyzes have suggested that the archaea of the clade DPANN may also belong to Euryarchaeota and that they may even be a polyphyletic group occupying different phylogenetic positions within Euryarchaeota. It is also debated whether the phylum Altiarchaeota should be classified in DPANN or Euryarchaeota. [14] A cladogram summarizing this proposal is graphed below. [15] [16] The groups marked in quotes are lineages assigned to DPANN, but phylogenetically separated from the rest.
|
A third phylogeny, 53 marker proteins based GTDB 08-RS214. [17] [18] [19]
|
Euryarchaeota s.s. |
Euryarchaeota | |
---|---|
Halobacterium sp. strain NRC-1, each cell about 5 µm in length. | |
Scientific classification | |
Domain: | Archaea |
Kingdom: |
Euryarchaeota Woese, Kandler & Wheelis, 1990 [1] |
Phyla [2] | |
Synonyms | |
|
Euryarchaeota (from Ancient Greek εὐρύς eurús, "broad, wide") is a kingdom of archaea. [3] Euryarchaeota are highly diverse and include methanogens, which produce methane and are often found in intestines; halobacteria, which survive extreme concentrations of salt; and some extremely thermophilic aerobes and anaerobes, which generally live at temperatures between 41 and 122 °C. They are separated from the other archaeans based mainly on rRNA sequences and their unique DNA polymerase. [4]
The Euryarchaeota are diverse in appearance and metabolic properties. The phylum contains organisms of a variety of shapes, including both rods and cocci. Euryarchaeota may appear either gram-positive or gram-negative depending on whether pseudomurein is present in the cell wall. [5] Euryarchaeota also demonstrate diverse lifestyles, including methanogens, halophiles, sulfate-reducers, and extreme thermophiles in each. [5] Others live in the ocean, suspended with plankton and bacteria. Although these marine euryarchaeota are difficult to culture and study in a lab, genomic sequencing suggests that they are motile heterotrophs. [6]
Though it was previously thought that euryarchaeota only lived in extreme environments (in terms of temperature, salt content and/or pH), a paper by Korzhenkov et al published in January 2019 showed that euryarchaeota also live in moderate environments, such as low-temperature acidic environments. In some cases, euryarchaeota outnumbered the bacteria present. [7] Euryarchaeota have also been found in other moderate environments such as water springs, marshlands, soil and rhizospheres. [8] Some euryarchaeota are highly adaptable; an order called Halobacteriales are usually found in extremely salty and sulfur-rich environments but can also grow in salt concentrations as low as that of seawater 2.5%. [8] In rhizospheres, the presence of euryarchaeota seems to be dependent on that of mycorrhizal fungi; a higher fungal population was correlated with higher euryarchaeotal frequency and diversity, while absence of mycorrihizal fungi was correlated with absence of euryarchaeota. [8]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [9] and National Center for Biotechnology Information (NCBI) [10]
16S rRNA based LTP_12_2021. [11] [12] [13] | Dombrowski et al. 2019, [14] Jordan et al. 2017 [15] and Cavalier-Smith2020. [16] | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Other phylogenetic analyzes have suggested that the archaea of the clade DPANN may also belong to Euryarchaeota and that they may even be a polyphyletic group occupying different phylogenetic positions within Euryarchaeota. It is also debated whether the phylum Altiarchaeota should be classified in DPANN or Euryarchaeota. [14] A cladogram summarizing this proposal is graphed below. [15] [16] The groups marked in quotes are lineages assigned to DPANN, but phylogenetically separated from the rest.
|
A third phylogeny, 53 marker proteins based GTDB 08-RS214. [17] [18] [19]
|
Euryarchaeota s.s. |