| Season | 1999–2000 |
|---|---|
| Champions | Koper |
| Promoted |
Koper Tabor Sežana |
| Relegated | |
| Matches played | 240 |
| Goals scored | 695 (2.9 per match) |
| Top goalscorer |
Milan Emeršič (21 goals) |
←
1998–99
2000–01 → | |
The 1999–2000 Slovenian Second League season started on 15 August 1999 and ended on 4 June 2000. Each team played a total of 30 matches.
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Promotion or relegation |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Koper (C, P) | 30 | 22 | 6 | 2 | 76 | 21 | +55 | 72 | Promotion to Slovenian PrvaLiga |
| 2 | Tabor Sežana (P) | 30 | 21 | 6 | 3 | 64 | 13 | +51 | 69 | |
| 3 | Šmartno | 30 | 18 | 5 | 7 | 57 | 39 | +18 | 59 | |
| 4 | Aluminij | 30 | 16 | 7 | 7 | 62 | 32 | +30 | 55 | |
| 5 | Železničar Maribor | 30 | 16 | 5 | 9 | 47 | 32 | +15 | 53 | |
| 6 | Zagorje | 30 | 14 | 6 | 10 | 53 | 35 | +18 | 48 | |
| 7 | Krka | 30 | 14 | 5 | 11 | 43 | 35 | +8 | 47 | |
| 8 | Livar | 30 | 14 | 3 | 13 | 52 | 47 | +5 | 45 | |
| 9 | Triglav Kranj | 30 | 11 | 5 | 14 | 37 | 42 | −5 | 38 | |
| 10 | Jadran Hrpelje-Kozina | 30 | 9 | 10 | 11 | 34 | 37 | −3 | 37 | |
| 11 | Nafta Lendava | 30 | 9 | 7 | 14 | 34 | 49 | −15 | 34 | |
| 12 | Šentjur | 30 | 7 | 9 | 14 | 29 | 52 | −23 | 30 | |
| 13 | Drava Ptuj (R) | 30 | 7 | 8 | 15 | 34 | 47 | −13 | 29 | Relegation to Slovenian Third League |
| 14 | Črenšovci (R) | 30 | 6 | 5 | 19 | 31 | 82 | −51 | 23 | |
| 15 | Rogoza (R) | 30 | 5 | 5 | 20 | 25 | 68 | −43 | 20 | |
| 16 | Korte (R) | 30 | 2 | 6 | 22 | 17 | 64 | −47 | 12 |
- ^ "30 let MNZ Ptuj" (PDF) (in Slovenian). MNZ Ptuj. p. 54. Retrieved 25 June 2016.
- Football Association of Slovenia (in Slovene)
| Season | 1999–2000 |
|---|---|
| Champions | Koper |
| Promoted |
Koper Tabor Sežana |
| Relegated | |
| Matches played | 240 |
| Goals scored | 695 (2.9 per match) |
| Top goalscorer |
Milan Emeršič (21 goals) |
←
1998–99
2000–01 → | |
The 1999–2000 Slovenian Second League season started on 15 August 1999 and ended on 4 June 2000. Each team played a total of 30 matches.
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Promotion or relegation |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Koper (C, P) | 30 | 22 | 6 | 2 | 76 | 21 | +55 | 72 | Promotion to Slovenian PrvaLiga |
| 2 | Tabor Sežana (P) | 30 | 21 | 6 | 3 | 64 | 13 | +51 | 69 | |
| 3 | Šmartno | 30 | 18 | 5 | 7 | 57 | 39 | +18 | 59 | |
| 4 | Aluminij | 30 | 16 | 7 | 7 | 62 | 32 | +30 | 55 | |
| 5 | Železničar Maribor | 30 | 16 | 5 | 9 | 47 | 32 | +15 | 53 | |
| 6 | Zagorje | 30 | 14 | 6 | 10 | 53 | 35 | +18 | 48 | |
| 7 | Krka | 30 | 14 | 5 | 11 | 43 | 35 | +8 | 47 | |
| 8 | Livar | 30 | 14 | 3 | 13 | 52 | 47 | +5 | 45 | |
| 9 | Triglav Kranj | 30 | 11 | 5 | 14 | 37 | 42 | −5 | 38 | |
| 10 | Jadran Hrpelje-Kozina | 30 | 9 | 10 | 11 | 34 | 37 | −3 | 37 | |
| 11 | Nafta Lendava | 30 | 9 | 7 | 14 | 34 | 49 | −15 | 34 | |
| 12 | Šentjur | 30 | 7 | 9 | 14 | 29 | 52 | −23 | 30 | |
| 13 | Drava Ptuj (R) | 30 | 7 | 8 | 15 | 34 | 47 | −13 | 29 | Relegation to Slovenian Third League |
| 14 | Črenšovci (R) | 30 | 6 | 5 | 19 | 31 | 82 | −51 | 23 | |
| 15 | Rogoza (R) | 30 | 5 | 5 | 20 | 25 | 68 | −43 | 20 | |
| 16 | Korte (R) | 30 | 2 | 6 | 22 | 17 | 64 | −47 | 12 |
- ^ "30 let MNZ Ptuj" (PDF) (in Slovenian). MNZ Ptuj. p. 54. Retrieved 25 June 2016.
- Football Association of Slovenia (in Slovene)